WormBase Tree Display for Variation: WBVar00091547

WBVar00091547 Name: Public_name: ok244
    Other_name: C09D8.1e.1:c.323_1021+13del
      C09D8.1i.1:c.1040_1738+13del
      C09D8.1a.1:c.908_1606+13del
      C09D8.1l.1:c.908_1678+13del
      C09D8.1j.1:c.1040_1810+13del
      C09D8.1d.1:c.323_1093+13del
      C09D8.1k.1:c.908_1606+13del
      C09D8.1n.1:c.323_1021+13del
      C09D8.1m.1:c.323_1093+13del
      C09D8.1f.1:c.908_1678+13del
    HGVSg: CHROMOSOME_II:g.10983833_10985176del
  Sequence_details: SMap: S_parent: Sequence: C09D8
    Flanking_sequences: acgatccttctactgctccaattggcaaaa gcacatcttccgattaaccctgatattttc
    Mapping_target: C09D8
    Type_of_mutation: Deletion
    PCR_product: OK244_external
      OK244_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031379
      WBStrain00047749
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004215
    Transcript: C09D8.1j.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1j.1:c.1040_1810+13del
        cDNA_position: 1040-?
        CDS_position: 1040-?
        Protein_position: 347-?
        Intron_number: 6-11/28
        Exon_number: 6-11/29
      C09D8.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1e.1:c.323_1021+13del
        cDNA_position: 363-?
        CDS_position: 323-?
        Protein_position: 108-?
        Intron_number: 4-8/26
        Exon_number: 4-8/27
      C09D8.1i.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1i.1:c.1040_1738+13del
        cDNA_position: 1040-?
        CDS_position: 1040-?
        Protein_position: 347-?
        Intron_number: 6-10/27
        Exon_number: 6-10/28
      C09D8.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1a.1:c.908_1606+13del
        cDNA_position: 908-?
        CDS_position: 908-?
        Protein_position: 303-?
        Intron_number: 6-10/28
        Exon_number: 6-10/29
      C09D8.1n.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1n.1:c.323_1021+13del
        cDNA_position: 323-?
        CDS_position: 323-?
        Protein_position: 108-?
        Intron_number: 3-7/24
        Exon_number: 3-7/25
      C09D8.1k.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1k.1:c.908_1606+13del
        cDNA_position: 908-?
        CDS_position: 908-?
        Protein_position: 303-?
        Intron_number: 6-10/27
        Exon_number: 6-10/28
      C09D8.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1d.1:c.323_1093+13del
        cDNA_position: 323-?
        CDS_position: 323-?
        Protein_position: 108-?
        Intron_number: 3-8/25
        Exon_number: 3-8/26
      C09D8.1f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1f.1:c.908_1678+13del
        cDNA_position: 908-?
        CDS_position: 908-?
        Protein_position: 303-?
        Intron_number: 6-11/28
        Exon_number: 6-11/29
      C09D8.1m.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1m.1:c.323_1093+13del
        cDNA_position: 361-?
        CDS_position: 323-?
        Protein_position: 108-?
        Intron_number: 4-9/27
        Exon_number: 4-9/28
      C09D8.1l.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09D8.1l.1:c.908_1678+13del
        cDNA_position: 908-?
        CDS_position: 908-?
        Protein_position: 303-?
        Intron_number: 6-11/29
        Exon_number: 6-11/30
  Isolation: Mutagen: TMP/UV
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele