WormBase Tree Display for Variation: WBVar00091573

WBVar00091573 Evidence: Paper_evidence: WBPaper00028448
  Name: Public_name: ok274
    HGVSg: CHROMOSOME_II:g.9998971_10000825delinsAAAAAA
  Sequence_details: SMap: S_parent: Sequence: ZK892
    Flanking_sequences: ttttcataaaatcctaaaagttcccaaaaa aatattaatctcaatctcaactggtcgaga
    Mapping_target: ZK892
    Type_of_mutation: Insertion: AAAAAA
      Deletion
    PCR_product: ok274_external
      ok274_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032126
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00002266
      WBGene00003773
    Transcript: ZK892.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 9-11/12
        Exon_number: 10-13/13
      ZK892.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 10-12/12
        Exon_number: 11-13/13
      ZK892.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 10-11/12
        Exon_number: 11-13/13
      ZK892.1f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 9-10/10
        Exon_number: 10-11/11
      ZK892.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 248-?
        CDS_position: 208-?
        Protein_position: 70-?
        Intron_number: 3/4
        Exon_number: 3-5/5
      ZK892.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 9-10/11
        Exon_number: 10-12/12
      ZK892.1b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 9-10/11
        Exon_number: 10-12/12
      ZK892.1c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 1204-?
        Intron_number: 10/10
        Exon_number: 10-11/11
      ZK892.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 8-9/10
        Exon_number: 9-11/11
  Isolation: Mutagen: UV/TMP
  Genetics: Mapping_data: In_multi_point: 4537
  Description: Phenotype_not_observed: WBPhenotype:0000679 Paper_evidence: WBPaper00028448
        Curator_confirmed: WBPerson712
        Remark: PKD-2::GFP localization is not different from wild type. Paper_evidence: WBPaper00028448
            Curator_confirmed: WBPerson712
  Reference: WBPaper00028448
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele