WormBase Tree Display for Variation: WBVar00091576
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| WBVar00091576 | Name | Public_name | ok277 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_V:g.14011598_14012663del | ||||
| Sequence_details | SMap | S_parent | Sequence | F58E10 | |
| Flanking_sequences | cacgacctcctccacggccaccgccgccat | taaataaaaaaataattatttcagattttc | |||
| Mapping_target | F58E10 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK277_external | ||||
| OK277_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036456 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000097 | |||
| WBGene00010260 | |||||
| Transcript | F58E10.4.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| Intron_number | 2/7 | ||||
| Exon_number | 1-2/8 | ||||
| F58E10.3a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-294 | ||||
| CDS_position | ?-169 | ||||
| Protein_position | ?-57 | ||||
| Intron_number | 2/8 | ||||
| Exon_number | 1-3/9 | ||||
| F58E10.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-405 | ||||
| CDS_position | ?-169 | ||||
| Protein_position | ?-57 | ||||
| Intron_number | 2/8 | ||||
| Exon_number | 1-3/9 | ||||
| F58E10.3a.4 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-220 | ||||
| CDS_position | ?-169 | ||||
| Protein_position | ?-57 | ||||
| Intron_number | 2/8 | ||||
| Exon_number | 1-3/9 | ||||
| F58E10.3a.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-274 | ||||
| CDS_position | ?-169 | ||||
| Protein_position | ?-57 | ||||
| Intron_number | 2/8 | ||||
| Exon_number | 1-3/9 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 4149 | ||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
