WormBase Tree Display for Variation: WBVar00091583
expand all nodes | collapse all nodes | view schema
WBVar00091583 | Name | Public_name | ok285 | ||
---|---|---|---|---|---|
Other_name | M01A10.2h.1:c.1526_2008-24del | ||||
M01A10.2g.1:c.1526_2008-24del | |||||
M01A10.2f.1:c.1526_2007+115del | |||||
M01A10.2e.1:c.1526_2007+115del | |||||
M01A10.2a.1:c.1526_2007+115del | |||||
M01A10.2i.1:c.1526_2008-24del | |||||
HGVSg | CHROMOSOME_I:g.5551277_5552856del | ||||
Sequence_details | SMap | S_parent | Sequence | M01A10 | |
Flanking_sequences | aagtaacacttttccggtttacgaaacaag | tgtctgtgattcgtgtatttcagatcgacg | |||
Mapping_target | M01A10 | ||||
Type_of_mutation | Deletion | ||||
PCR_product | OK285_external | ||||
OK285_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00035595 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00006594 | |||
WBGene00197900 | |||||
Transcript | M01A10.2g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | M01A10.2g.1:c.1526_2008-24del | ||||
cDNA_position | 1633-? | ||||
CDS_position | 1526-? | ||||
Protein_position | 509-? | ||||
Intron_number | 11-14/25 | ||||
Exon_number | 11-14/26 | ||||
M01A10.2f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | M01A10.2f.1:c.1526_2007+115del | ||||
cDNA_position | 1635-? | ||||
CDS_position | 1526-? | ||||
Protein_position | 509-? | ||||
Intron_number | 11-14/25 | ||||
Exon_number | 11-14/26 | ||||
M01A10.7 | VEP_consequence | transcript_ablation | |||
VEP_impact | HIGH | ||||
Exon_number | 1/1 | ||||
M01A10.2i.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | M01A10.2i.1:c.1526_2008-24del | ||||
cDNA_position | 1526-? | ||||
CDS_position | 1526-? | ||||
Protein_position | 509-? | ||||
Intron_number | 10-13/23 | ||||
Exon_number | 10-13/24 | ||||
M01A10.2h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | M01A10.2h.1:c.1526_2008-24del | ||||
cDNA_position | 1633-? | ||||
CDS_position | 1526-? | ||||
Protein_position | 509-? | ||||
Intron_number | 11-14/24 | ||||
Exon_number | 11-14/25 | ||||
M01A10.2e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | M01A10.2e.1:c.1526_2007+115del | ||||
cDNA_position | 1632-? | ||||
CDS_position | 1526-? | ||||
Protein_position | 509-? | ||||
Intron_number | 11-14/25 | ||||
Exon_number | 11-14/26 | ||||
M01A10.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | M01A10.2a.1:c.1526_2007+115del | ||||
cDNA_position | 1633-? | ||||
CDS_position | 1526-? | ||||
Protein_position | 509-? | ||||
Intron_number | 11-14/24 | ||||
Exon_number | 11-14/25 | ||||
Isolation | Mutagen | UV/TMP | |||
Description | Phenotype (19) | ||||
Reference | WBPaper00043908 | ||||
WBPaper00023968 | |||||
WBPaper00036766 | |||||
WBPaper00026383 | |||||
WBPaper00025744 | |||||
WBPaper00024146 | |||||
WBPaper00064917 | |||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |