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WormBase Tree Display for Variation: WBVar00091630

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Name Class

WBVar00091630NamePublic_nameok332
HGVSgCHROMOSOME_V:g.11036971_11039494delinsTCTACATATTCTCGAATACCACATAGCAAAAGTATGACAATCGCACAATTTTGAAATTTGAAAATCGCGAATTTTCAAATCTCGCTAACTTTCATGTTTGAATTTCCTCCAAAATGAGAAGCCACACCCACTCGCACAAATCATCTGATTGGCTCAAAAGTGGACAGTTCATTGATTGGTTGTAGTTCTGATTTTGGAGGAAATTCTATTCAAAAGTTGAAAATTGCGTTTTCGAGAGTTGACCATTTTTTCAATTAATTTAAAAATCTTTTTTGATTTTCTCTTCGTTTGTATTGTGGTACTAAAACATATGGGACTATTTCGAGTATACTAAAATAAAATTTTCATTTAATTCTTCTTTATCTGCTTGAATTTTTAACGTTATCCTATTCTACCTACCTTGGCATGCCTACTAAATCTTGCTTCATGTTCATCTCGTATCCTTTTCATTGCTTGAAACGGCTGATCATTGAAAAACGGCGGTTCTCCTTCTACCATCTCGATGAGCATTATTCCAAAAGACCAAATATCAGCACGAGTGTCATATGGTTCACGAGCAATAACTTCTGCAGCTGTCCAGTAAGGCGTACCAACAAGCGAACGACGACGAGGAACTTCTTCAGATAGTTGACCACAGAAACCGAAATCCGTCAGTTTCACAGTTCCGTCTCGCTTCAGTAGAATTGAGTCGCTTTTTATGTCTCTGAATATAACATTTATTAAGGTGATTTCAAGAATAAAACCAACCTGTGTATTACTTTTCTTGCGTGTAGAAAGTCTAGAGCACCAAGAACCTGCCTTGAAATGGTAGCAATTTGTGGCTCAGTCATACGAGTTGCAGTCACAATATCTGTCAAGGATCCACA
Sequence_detailsSMapS_parentSequenceC45B11
Flanking_sequencestgtgaaagcaattcagagagttccacagatttattgaaaatcgattgaagtgtgaaaaac
Mapping_targetC45B11
Type_of_mutationInsertiontctacatattctcgaataccacatagcaaaagtatgacaatcgcacaattttgaaatttgaaaatcgcgaattttcaaatctcgctaactttcatgtttgaatttcctccaaaatgagaagccacacccactcgcacaaatcatctgattggctcaaaagtggacagttcattgattggttgtagttctgattttggaggaaattctattcaaaagttgaaaattgcgttttcgagagttgaccattttttcaattaatttaaaaatcttttttgattttctcttcgtttgtattgtggtactaaaacatatgggactatttcgagtatactaaaataaaattttcatttaattcttctttatctgcttgaatttttaacgttatcctattctacctaccttggcatgcctactaaatcttgcttcatgttcatctcgtatccttttcattgcttgaaacggctgatcattgaaaaacggcggttctccttctaccatctcgatgagcattattccaaaagaccaaatatcagcacgagtgtcatatggttcacgagcaataacttctgcagctgtccagtaaggcgtaccaacaagcgaacgacgacgaggaacttcttcagatagttgaccacagaaaccgaaatccgtcagtttcacagttccgtctcgcttcagtagaattgagtcgctttttatgtctctgaatataacatttattaaggtgatttcaagaataaaaccaacctgtgtattacttttcttgcgtgtagaaagtctagagcaccaagaacctgccttgaaatggtagcaatttgtggctcagtcatacgagttgcagtcacaatatctgtcaaggatccaca
Deletion
PCR_productOK332_external
OK332_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00035624
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00006443
TranscriptC45B11.1a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
cDNA_position?-1374
CDS_position?-1352
Protein_position?-451
Intron_number2-6/7
Exon_number1-7/8
C45B11.1b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
cDNA_position?-1374
CDS_position?-1346
Protein_position?-449
Intron_number2-6/7
Exon_number1-7/8
IsolationMutagenUV/TMP
DescriptionPhenotype_not_observedWBPhenotype:0000593Paper_evidenceWBPaper00035583
Curator_confirmedWBPerson2987
Remarkpak-2(ok332) mutant animals did not exhibit a copper sensitivity (Figure 1C)Paper_evidenceWBPaper00035583
Curator_confirmedWBPerson2987
Affected_byMoleculeWBMol:00002862Paper_evidenceWBPaper00035583
Curator_confirmedWBPerson2987
Phenotype_assayTreatmentEach animal was cultured from embryogenesis on NGM plates containing 100 micromolar copper ion. The percentages of worms reaching adulthood 4 days after egg laying were scored.Paper_evidenceWBPaper00035583
Curator_confirmedWBPerson2987
ReferenceWBPaper00035583
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele