WormBase Tree Display for Variation: WBVar00091630
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WBVar00091630 | Name | Public_name | ok332 | |||||
---|---|---|---|---|---|---|---|---|
HGVSg | CHROMOSOME_V:g.11036971_11039494delinsTCTACATATTCTCGAATACCACATAGCAAAAGTATGACAATCGCACAATTTTGAAATTTGAAAATCGCGAATTTTCAAATCTCGCTAACTTTCATGTTTGAATTTCCTCCAAAATGAGAAGCCACACCCACTCGCACAAATCATCTGATTGGCTCAAAAGTGGACAGTTCATTGATTGGTTGTAGTTCTGATTTTGGAGGAAATTCTATTCAAAAGTTGAAAATTGCGTTTTCGAGAGTTGACCATTTTTTCAATTAATTTAAAAATCTTTTTTGATTTTCTCTTCGTTTGTATTGTGGTACTAAAACATATGGGACTATTTCGAGTATACTAAAATAAAATTTTCATTTAATTCTTCTTTATCTGCTTGAATTTTTAACGTTATCCTATTCTACCTACCTTGGCATGCCTACTAAATCTTGCTTCATGTTCATCTCGTATCCTTTTCATTGCTTGAAACGGCTGATCATTGAAAAACGGCGGTTCTCCTTCTACCATCTCGATGAGCATTATTCCAAAAGACCAAATATCAGCACGAGTGTCATATGGTTCACGAGCAATAACTTCTGCAGCTGTCCAGTAAGGCGTACCAACAAGCGAACGACGACGAGGAACTTCTTCAGATAGTTGACCACAGAAACCGAAATCCGTCAGTTTCACAGTTCCGTCTCGCTTCAGTAGAATTGAGTCGCTTTTTATGTCTCTGAATATAACATTTATTAAGGTGATTTCAAGAATAAAACCAACCTGTGTATTACTTTTCTTGCGTGTAGAAAGTCTAGAGCACCAAGAACCTGCCTTGAAATGGTAGCAATTTGTGGCTCAGTCATACGAGTTGCAGTCACAATATCTGTCAAGGATCCACA | |||||||
Sequence_details | SMap | S_parent | Sequence | C45B11 | ||||
Flanking_sequences | tgtgaaagcaattcagagagttccacagat | ttattgaaaatcgattgaagtgtgaaaaac | ||||||
Mapping_target | C45B11 | |||||||
Type_of_mutation | Insertion | tctacatattctcgaataccacatagcaaaagtatgacaatcgcacaattttgaaatttgaaaatcgcgaattttcaaatctcgctaactttcatgtttgaatttcctccaaaatgagaagccacacccactcgcacaaatcatctgattggctcaaaagtggacagttcattgattggttgtagttctgattttggaggaaattctattcaaaagttgaaaattgcgttttcgagagttgaccattttttcaattaatttaaaaatcttttttgattttctcttcgtttgtattgtggtactaaaacatatgggactatttcgagtatactaaaataaaattttcatttaattcttctttatctgcttgaatttttaacgttatcctattctacctaccttggcatgcctactaaatcttgcttcatgttcatctcgtatccttttcattgcttgaaacggctgatcattgaaaaacggcggttctccttctaccatctcgatgagcattattccaaaagaccaaatatcagcacgagtgtcatatggttcacgagcaataacttctgcagctgtccagtaaggcgtaccaacaagcgaacgacgacgaggaacttcttcagatagttgaccacagaaaccgaaatccgtcagtttcacagttccgtctcgcttcagtagaattgagtcgctttttatgtctctgaatataacatttattaaggtgatttcaagaataaaaccaacctgtgtattacttttcttgcgtgtagaaagtctagagcaccaagaacctgccttgaaatggtagcaatttgtggctcagtcatacgagttgcagtcacaatatctgtcaaggatccaca | ||||||
Deletion | ||||||||
PCR_product | OK332_external | |||||||
OK332_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00035624 | |||||||
Laboratory | RB | |||||||
Person | WBPerson46 | |||||||
KO_consortium_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00006443 | ||||||
Transcript | C45B11.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
cDNA_position | ?-1374 | |||||||
CDS_position | ?-1352 | |||||||
Protein_position | ?-451 | |||||||
Intron_number | 2-6/7 | |||||||
Exon_number | 1-7/8 | |||||||
C45B11.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
cDNA_position | ?-1374 | |||||||
CDS_position | ?-1346 | |||||||
Protein_position | ?-449 | |||||||
Intron_number | 2-6/7 | |||||||
Exon_number | 1-7/8 | |||||||
Isolation | Mutagen | UV/TMP | ||||||
Description | Phenotype_not_observed | WBPhenotype:0000593 | Paper_evidence | WBPaper00035583 | ||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | pak-2(ok332) mutant animals did not exhibit a copper sensitivity (Figure 1C) | Paper_evidence | WBPaper00035583 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Affected_by | Molecule | WBMol:00002862 | Paper_evidence | WBPaper00035583 | ||||
Curator_confirmed | WBPerson2987 | |||||||
Phenotype_assay | Treatment | Each animal was cultured from embryogenesis on NGM plates containing 100 micromolar copper ion. The percentages of worms reaching adulthood 4 days after egg laying were scored. | Paper_evidence | WBPaper00035583 | ||||
Curator_confirmed | WBPerson2987 | |||||||
Reference | WBPaper00035583 | |||||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||||
Method | KO_consortium_allele |