WormBase Tree Display for Variation: WBVar00091645

WBVar00091645 Name: Public_name: ok347
    Other_name: F38A6.2a.1:c.82+339_552del
    HGVSg: CHROMOSOME_V:g.20768412_20769712del
  Sequence_details: SMap: S_parent: Sequence: F38A6
    Flanking_sequences: attcatagttgcactggtacttgcttccga AAATAACGAAAATGACGTCACTCAATTGCA
    Mapping_target: F38A6
    Type_of_mutation: Deletion
    PCR_product: OK347_external
      OK347_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031384
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001248
    Transcript: F38A6.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F38A6.2a.1:c.82+339_552del
        cDNA_position: ?-581
        CDS_position: ?-552
        Protein_position: ?-184
        Intron_number: 2-4/17
        Exon_number: 3-5/18
      F38A6.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-543
        CDS_position: ?-543
        Protein_position: ?-181
        Intron_number: 1-3/15
        Exon_number: 1-4/16
  Isolation: Mutagen: UV/TMP
  Description: Phenotype_not_observed: WBPhenotype:0000456 Paper_evidence: WBPaper00062197
        Curator_confirmed: WBPerson11752
        Remark: Figure 3G Paper_evidence: WBPaper00062197
            Curator_confirmed: WBPerson11752
  Reference: WBPaper00062197
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele