WormBase Tree Display for Variation: WBVar00091707

WBVar00091707 Name: Public_name: ok413
    Other_name: C25B8.1b.1:c.734_861+419del
      C25B8.1a.1:c.590_717+419del
    HGVSg: CHROMOSOME_X:g.6622687_6623233del
  Sequence_details: SMap: S_parent: Sequence: C25B8
    Flanking_sequences: catctatcacagtattatgtatcggagcaa tctacaatgctttatgatgaatgatggtga
    Mapping_target: C25B8
    Type_of_mutation: Deletion
    PCR_product: ok413_external
      ok413_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036366
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00016088
      WBGene00002233
    Transcript: C25B8.1a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C25B8.1a.1:c.590_717+419del
        cDNA_position: 759-?
        CDS_position: 590-?
        Protein_position: 197-?
        Intron_number: 8/17
        Exon_number: 8/18
      C25B8.1b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C25B8.1b.1:c.734_861+419del
        cDNA_position: 744-?
        CDS_position: 734-?
        Protein_position: 245-?
        Intron_number: 9/18
        Exon_number: 9/19
      C25B8.4c.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/6
        Exon_number: 1-2/7
      C25B8.4a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/7
        Exon_number: 1-2/8
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele