WormBase Tree Display for Variation: WBVar00091737
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| WBVar00091737 | Name | Public_name | ok446 | ||
|---|---|---|---|---|---|
| Other_name | ZK1005.1a.1:c.3489_4125delinsGA | ||||
| ZK1005.1b.1:c.3375_4011delinsGA | |||||
| CE33259:p.Gln1126ArgfsTer29 | |||||
| CE24712:p.Gln1164ArgfsTer29 | |||||
| HGVSg | CHROMOSOME_V:g.1279930_1280566delinsTC | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK1005 | |
| Flanking_sequences | aattttcatagtttctggttgcttcaagcc | tctggtcgaatcagagatgacaaaagtgaa | |||
| Mapping_target | ZK1005 | ||||
| Type_of_mutation | Insertion | TC | |||
| Deletion | |||||
| PCR_product | OK446_external | ||||
| OK446_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031422 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004053 | |||
| Transcript | ZK1005.1b.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1005.1b.1:c.3375_4011delinsGA | ||||
| HGVSp | CE33259:p.Gln1126ArgfsTer29 | ||||
| cDNA_position | 3398-4034 | ||||
| CDS_position | 3375-4011 | ||||
| Protein_position | 1125-1337 | ||||
| Exon_number | 6/12 | ||||
| Codon_change | gaACAAATTGAAATTGCCGATGTTAATGGAAATACGATTCTTCATCTTGCTGCAATCAAGAATTCTACTATTTGCCTGATGACTCTGATTCGAAAGAAATGCCACGTAGATTTGAAGAATAAGGATGGAAACACTCCACTTGCTCTTGCTGTTCATCATGGAAGACAATCATCCGCTTTGACTTTGATTCAAGCTAACGCAGATGTCACTGAAAAGATTTTCGTACCTGCTCTGAAGCCAACGTCCGATTTCGACCAAAACAGTAGCGGCACGGAAGCTGAGAAATTCTGGAAGTGGCATGGAAAAGAGAAAAAAGTTTTGGAGGATCTGCACACAACGATTCCAGCGTCGGTGGTGAGCAAGGGTGGAAGTTGGGAAGCAATGGTCTACGTTTTACTGGACGTTCTCGGACAAAACACTGGAAGTATGGCACAGCTCACTGATGCAGCATTGCGACGTGGACAACTCAATCTTGCCAATCAGCTGCTCAAGTCCATAGAAGCGTTGATTGATGGAGCAGTTTTGAATAGCTCTTATGATCTGTTGGATACATTTGCTGAGAAATGTTTTGGAGCATTAACCTCGGAAGAAACTATCGAGAAGACAGTTTTGAATAGAATTATTCTCACTCGCGGCCTT/gaGA | ||||
| Amino_acid_change | EQIEIADVNGNTILHLAAIKNSTICLMTLIRKKCHVDLKNKDGNTPLALAVHHGRQSSALTLIQANADVTEKIFVPALKPTSDFDQNSSGTEAEKFWKWHGKEKKVLEDLHTTIPASVVSKGGSWEAMVYVLLDVLGQNTGSMAQLTDAALRRGQLNLANQLLKSIEALIDGAVLNSSYDLLDTFAEKCFGALTSEETIEKTVLNRIILTRGL/EX | ||||
| ZK1005.1a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1005.1a.1:c.3489_4125delinsGA | ||||
| HGVSp | CE24712:p.Gln1164ArgfsTer29 | ||||
| cDNA_position | 3505-4141 | ||||
| CDS_position | 3489-4125 | ||||
| Protein_position | 1163-1375 | ||||
| Exon_number | 7/13 | ||||
| Codon_change | gaACAAATTGAAATTGCCGATGTTAATGGAAATACGATTCTTCATCTTGCTGCAATCAAGAATTCTACTATTTGCCTGATGACTCTGATTCGAAAGAAATGCCACGTAGATTTGAAGAATAAGGATGGAAACACTCCACTTGCTCTTGCTGTTCATCATGGAAGACAATCATCCGCTTTGACTTTGATTCAAGCTAACGCAGATGTCACTGAAAAGATTTTCGTACCTGCTCTGAAGCCAACGTCCGATTTCGACCAAAACAGTAGCGGCACGGAAGCTGAGAAATTCTGGAAGTGGCATGGAAAAGAGAAAAAAGTTTTGGAGGATCTGCACACAACGATTCCAGCGTCGGTGGTGAGCAAGGGTGGAAGTTGGGAAGCAATGGTCTACGTTTTACTGGACGTTCTCGGACAAAACACTGGAAGTATGGCACAGCTCACTGATGCAGCATTGCGACGTGGACAACTCAATCTTGCCAATCAGCTGCTCAAGTCCATAGAAGCGTTGATTGATGGAGCAGTTTTGAATAGCTCTTATGATCTGTTGGATACATTTGCTGAGAAATGTTTTGGAGCATTAACCTCGGAAGAAACTATCGAGAAGACAGTTTTGAATAGAATTATTCTCACTCGCGGCCTT/gaGA | ||||
| Amino_acid_change | EQIEIADVNGNTILHLAAIKNSTICLMTLIRKKCHVDLKNKDGNTPLALAVHHGRQSSALTLIQANADVTEKIFVPALKPTSDFDQNSSGTEAEKFWKWHGKEKKVLEDLHTTIPASVVSKGGSWEAMVYVLLDVLGQNTGSMAQLTDAALRRGQLNLANQLLKSIEALIDGAVLNSSYDLLDTFAEKCFGALTSEETIEKTVLNRIILTRGL/EX | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 4593 | ||
| Remark | Last updated on 29 Nov 2002 | ||||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
