WormBase Tree Display for Variation: WBVar00091795
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| WBVar00091795 | Name | Public_name | ok508 | ||
|---|---|---|---|---|---|
| HGVSg | |||||
| Sequence_details | SMap | S_parent | Sequence | F20D6 | |
| Flanking_sequences | agcgaactgggaggcaacactggatggacc | ctgaaaatcataggtaatttagaaaaaaag | |||
| Mapping_target | F20D6 | ||||
| Type_of_mutation | Insertion | NCCNCCACCCCCCG | |||
| Deletion | |||||
| PCR_product | ok508_external | ||||
| ok508_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031460 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017640 | |||
| WBGene00171297 | |||||
| Transcript | F20D6.14 | ||||
| F20D6.11.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 578-1546 | ||||
| CDS_position | 568-1536 | ||||
| Protein_position | 190-512 | ||||
| Intron_number | 5-8/10 | ||||
| Exon_number | 5-9/11 | ||||
| Codon_change | AAACCAGCAGCAACCGGAGAGGATATTCGTTTGAGAAAAGATGATGCGTTTTACGAAGAGAGAAATGTCAAATTTCTTTTGAAAACATCGGTGATTGCAGTAAATCATAAAAGTAGAGAAGTCAGTTTATCGAACGGAGAAACTGTTGTTTATTCAAAACTAATTATTGCTACTGGAGGAAATGTTAGAAAGTTGCAAGTACCCGGATCAGATTTGAAAGTGAGAGTAAAACGAAAATCTGAAAAATATAAACATGTGCAATTTCCAGAATATTTGCTACCTTCGTAAAGTAGAAGAAGCCAACATAATTTCCAACCTTCATCCTGGGAAGCACGTCGTCTGTGTAGGCTCATCATTTATCGGAATGGAAGTGGCATCCGCTCTGGCAGAAAAAGCTGCGTCAGTTACAGTTATTTCCAATACTCCGGAGCCTCTTCCAGTTTTTGGATCAGATATTGGTAAAGGAATCCGTCTGAAGTTTGAAGAAAAAGGAGTAAAGTTCGAGCTGGCTGCAAATGTGGTTGCTCTTCGTGGAAACGATCAAGGAGAAGTCTCAAAAGTTATTTTAGAGAATGGAAAAGAGCTTGATGTAGATCTTCTTGTTTGTGGAATTGGTGTTACCCCAGCCACTAAGTTTTTGGAAGGATCTGGTATCAAATTGGACAATAGAGGATTCATTGAAGTTGATGAAAAGTTTAGAGTGGGTTTAGTTTATTTTATGATGCTTTTTTAATCTCTAATACTTCAGACTAATATCAGCTACATCTTCGCAATGGGTGATGTTGTCACAGCTCCTCTCCCACTTTGGGATATTGACAGTATCAATATTCAACACTTCCAAACTGCTCAAGCACATGGTAAACCAGAAGATATTCAAATTTAACTATCGATGTTTAATATTTTAGGACAACATCTTGGATACACTATTGTTGGAAAACCTCAACCTGGACCTATTGTTCCATACTTTTGGACTCTGTTTTTCTTTGCGTTTGGTTTGAAGTTCTCAGGATGCAATCAAGGATCCACAAAGGAATACACTAATGGAGATCCTGAAACTGGAACTTTCATTCGATACTTCTTGAAGTAAGTGAACAATTATACATTTTTCATGTTAGTAAAAACTTTAAGAAAAGACAAAGTCGTAGCTGTAGCTGCTGGT/CGGGGGGTGGNGGN | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
