WormBase Tree Display for Variation: WBVar00091815
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| WBVar00091815 | Name | Public_name | ok528 | |||||
|---|---|---|---|---|---|---|---|---|
| HGVSg | ||||||||
| Sequence_details | SMap | S_parent | Sequence | T21E8 | ||||
| Flanking_sequences | ttttttgtagatgttcagaaattaaagaca | attgcgattctttgcttttgtcctccagaa | ||||||
| Mapping_target | T21E8 | |||||||
| Type_of_mutation | Insertion | CTACTACATAAGTATCAGGNGTTT | ||||||
| Deletion | ||||||||
| PCR_product | ok528_external | |||||||
| ok528_internal | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Strain | WBStrain00035647 | |||||||
| Laboratory | RB | |||||||
| Person | WBPerson46 | |||||||
| KO_consortium_allele | ||||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00004001 | ||||||
| Transcript | T21E8.2.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,intron_variant | |||||
| VEP_impact | HIGH | |||||||
| cDNA_position | 1590-2695 | |||||||
| CDS_position | 1590-2695 | |||||||
| Protein_position | 530-899 | |||||||
| Intron_number | 8-13/15 | |||||||
| Exon_number | 8-14/16 | |||||||
| Codon_change | atTGCACGAACGTTGGTTCGAAATCCAAAAATTCTTCTTCTCGATGAGGCAACCAGTGCATTGGATAATGAAAGTGAGCAAGTTGTACAGAAAGCACTTGAAAACGTTAGTTTACATACTAATATCTGAAAGTATAAACGTGTATACAGGCGTCGCAAGGAAGAACAACTATAGTTGTGGCACATCGATTATCAACAATCAGAAATGCCAGTAAAATTATTGTGATGCAAAAAGGAGAGGTGAGTAATTTGATAAATAATTTGATCACTGTTAGTTTCTGAACGCCAAGAAGGGGAATTCCGGTGTACCAGGGGTTCTTTAAAAGGTAACAGAGAAATAGTGATCGCTCTAAAAAAAAGTTAACCTCAGGGTTGCGCTTTCTCAAAAACACAATTAGGAACAATGAAGTTTACAGATTTTTCATTAGACATAGAGTGAGTGATTCAACAATTCAAAAGTCTAGAAACATAATTTTACAGATTGTTGAAGTTGGGAATCATGATGAGCTAATTGCGAAACGAGGTGTGTACAATGATCTAGTTCAAGCCCAATTGTTAGAATCTCACGATGACCATGGTAAGAAATATCTGCTACATCATTCAATTTCTAAAATTGTTTGGGTTTAGAAGAGCTTCCACCACTTGCTGCAAGACAACTATCACAAGAGTTATCACCATTACATAGTTATGCAATTCAAAGAAGTACAAGTAATGACGCAGGTGTTCATGACGATGATATGGAACGAATATTAGATGAACTCAGCAAAGAAGGAGCAAAGAAATCAAATCTCAGAGAAATTGTGAAGCAATGTCGACCAGACTACTGTTTCTTATTTATTGCAGTTTTTGGAAGTGCCATACAAGGAGTTAGCTATCCTATACTGGCTCAATTGATAGTACGAACATATGAAGTGAGTTCGCTTTGTGATTCACTTTTATCATTGTTTTAAATGTTAGGGGTTCGCGATGATTGGTGAAGACATGCTCTACTACAGTCACCTTTGGGCGCTATCTTTCATGTTTCTGGCTGTGTTCCGTCCACTTACATTATATTGTCAATATTACTACTTTGGAAAAGTTTCTGAACAATTATCCACACGACTCCGCATCAAGTCGTTCAGTCATATGTTGTCACTTCCATGCGCATTTTACGATGATCCCAATCACTCTGCAACTCGATTGTCTAACAGATTGAATACGGATTCTTCTAATGTCAAGGCAGCAGTAGATGATCGGCTGGGATGTGTCATCATGACTGTGGTAGCAATTTCAATCGCAATTACAACTGCTTCCTTGTACTGTTGGAAAATGACTCTAGAGGTGAGTAGGAGCTCCGACAATTCTATTAAGCAGATTTGTTGGTCCAAAGGTTGGCCGGAGATTTATAAAAGGCAAATTGTTTATTGGCTTTTAATTGTTTTTTATGATTCAGGTCAATAAACAATACAATACTATACAACTACACAGTGTTACACAGTGTTGTGATACTAACTTATTTATTTAGGTATTGATATTTTTCCCGTTGTTGTACTTGGCTGAATATTGTTATGATGCTGCTACCGAAACGTCTATCCAGGAAGATACTATAGCTTTTGAAAATAGTAACAGAGTAAGTTCGATGGTACCGTCGCATTTTCACATGCAAATGTTTAGACTGCGATTGAAGCGTTGGAAAATATGAGAACAGTTCGAGCACTTAATTTGGAAGATAAAATAAtg/atAAACNCCTGATACTTATGTAGTAGtg | |||||||
| Interactor | WBInteraction000519495 | |||||||
| WBInteraction000519496 | ||||||||
| WBInteraction000519497 | ||||||||
| WBInteraction000519498 | ||||||||
| Isolation | Mutagen | UV/TMP | ||||||
| Genetics | Mapping_data | In_multi_point | 4578 | |||||
| 4579 | ||||||||
| Description | Phenotype_not_observed | WBPhenotype:0001208 | Paper_evidence | WBPaper00027644 | ||||
| Curator_confirmed | WBPerson557 | |||||||
| Remark | Animals were not resistant to RNAi as assayed on either pop-1 RNAi or unc-22 RNAi. | Paper_evidence | WBPaper00027644 | |||||
| Curator_confirmed | WBPerson557 | |||||||
| Phenotype_assay | Treatment | Animals reared on both pop-1 and unc-22 feeding plates at 15, 20, 25, and 26C. | Paper_evidence | WBPaper00027644 | ||||
| Curator_confirmed | WBPerson557 | |||||||
| Reference | WBPaper00027644 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||||
| Method | KO_consortium_allele |
