WormBase Tree Display for Variation: WBVar00091853
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| WBVar00091853 | Name | Public_name | ok567 | ||
|---|---|---|---|---|---|
| Other_name | Y54E10A.9c.1:c.320+23_1561del | ||||
| Y54E10A.9b.1:c.272+23_1513del | |||||
| Y54E10A.9a.1:c.263+23_1504del | |||||
| Y54E10A.9c.2:c.320+23_1561del | |||||
| HGVSg | CHROMOSOME_I:g.3160288_3161620del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54E10A | |
| Flanking_sequences | cttgatgaagccattctgggacttcttggt | aatcagaacattttaatctcacctttcgga | |||
| Mapping_target | Y54E10A | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok567_external | ||||
| ok567_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035815 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006888 | |||
| Transcript | Y54E10A.9c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.9c.1:c.320+23_1561del | ||||
| cDNA_position | ?-1771 | ||||
| CDS_position | ?-1561 | ||||
| Protein_position | ?-521 | ||||
| Intron_number | 5-6/9 | ||||
| Exon_number | 6-7/10 | ||||
| Y54E10A.9a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.9a.1:c.263+23_1504del | ||||
| cDNA_position | ?-1612 | ||||
| CDS_position | ?-1504 | ||||
| Protein_position | ?-502 | ||||
| Intron_number | 5-6/9 | ||||
| Exon_number | 6-7/10 | ||||
| Y54E10A.9c.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.9c.2:c.320+23_1561del | ||||
| cDNA_position | ?-1596 | ||||
| CDS_position | ?-1561 | ||||
| Protein_position | ?-521 | ||||
| Intron_number | 4-5/8 | ||||
| Exon_number | 5-6/9 | ||||
| Y54E10A.9b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.9b.1:c.272+23_1513del | ||||
| cDNA_position | ?-1621 | ||||
| CDS_position | ?-1513 | ||||
| Protein_position | ?-505 | ||||
| Intron_number | 5-6/9 | ||||
| Exon_number | 6-7/10 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 4749 | ||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
