WormBase Tree Display for Variation: WBVar00091872
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| WBVar00091872 | Name | Public_name | ok586 | ||
|---|---|---|---|---|---|
| Other_name | CE50375:p.Arg204_Ter941delinsProPheAsnPhePheSerLeuSerAlaThrIleSerSerPheGlyPheCysCysCysTer | ||||
| CE29815:p.Arg482_Ter1219delinsProPheAsnPhePheSerLeuSerAlaThrIleSerSerPheGlyPheCysCysCysTer | |||||
| K08B12.5d.1:c.611_2822delinsCCTTCAATTTCTTTTCACTTTCCGCCACAATTTCATCTTTCGGCTTTTGTTGTTGTTGAGCAAGAGCTTCATCTTCCAATCGTTTATTGAGAATTTGTATTTCGTCTTTCAGCTGTGCTATCGT | |||||
| K08B12.5b.1:c.1445_3656delinsCCTTCAATTTCTTTTCACTTTCCGCCACAATTTCATCTTTCGGCTTTTGTTGTTGTTGAGCAAGAGCTTCATCTTCCAATCGTTTATTGAGAATTTGTATTTCGTCTTTCAGCTGTGCTATCGT | |||||
| K08B12.5c.1:c.605_2816delinsCCTTCAATTTCTTTTCACTTTCCGCCACAATTTCATCTTTCGGCTTTTGTTGTTGTTGAGCAAGAGCTTCATCTTCCAATCGTTTATTGAGAATTTGTATTTCGTCTTTCAGCTGTGCTATCGT | |||||
| K08B12.5a.2:c.1451_3662delinsCCTTCAATTTCTTTTCACTTTCCGCCACAATTTCATCTTTCGGCTTTTGTTGTTGTTGAGCAAGAGCTTCATCTTCCAATCGTTTATTGAGAATTTGTATTTCGTCTTTCAGCTGTGCTATCGT | |||||
| K08B12.5a.1:c.1451_3662delinsCCTTCAATTTCTTTTCACTTTCCGCCACAATTTCATCTTTCGGCTTTTGTTGTTGTTGAGCAAGAGCTTCATCTTCCAATCGTTTATTGAGAATTTGTATTTCGTCTTTCAGCTGTGCTATCGT | |||||
| CE50453:p.Arg202_Ter939delinsProPheAsnPhePheSerLeuSerAlaThrIleSerSerPheGlyPheCysCysCysTer | |||||
| CE30818:p.Arg484_Ter1221delinsProPheAsnPhePheSerLeuSerAlaThrIleSerSerPheGlyPheCysCysCysTer | |||||
| HGVSg | CHROMOSOME_V:g.6262249_6264695delinsACGATAGCACAGCTGAAAGACGAAATACAAATTCTCAATAAACGATTGGAAGATGAAGCTCTTGCTCAACAACAACAAAAGCCGAAAGATGAAATTGTGGCGGAAAGTGAAAAGAAATTGAAGG | ||||
| Sequence_details | SMap | S_parent | Sequence | F31F7 | |
| Flanking_sequences | actgtttcaacacaccgctgtttgttctct | ggggattttcagcgacatgttgtgcaataa | |||
| Mapping_target | F31F7 | ||||
| Type_of_mutation | Insertion | ACGATAGCACAGCTGAAAGACGAAATACAAATTCTCAATAAACGATTGGAAGATGAAGCTCTTGCTCAACAACAACAAAAGCCGAAAGATGAAATTGTGGCGGAAAGTGAAAAGAAATTGAAGG | |||
| Deletion | |||||
| PCR_product | ok586_external | ||||
| ok586_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035672 | ||||
| WBStrain00040409 | |||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006437 | |||
| Transcript | K08B12.5b.1 (11) | ||||
| K08B12.5e.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-1625 | ||||
| CDS_position | ?-1625 | ||||
| Protein_position | ?-542 | ||||
| Exon_number | 1/6 | ||||
| K08B12.5d.1 (11) | |||||
| K08B12.5a.2 (11) | |||||
| K08B12.5a.1 (11) | |||||
| K08B12.5c.1 (11) | |||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
