WormBase Tree Display for Variation: WBVar00091882
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| WBVar00091882 | Name | Public_name | ok596 | ||
|---|---|---|---|---|---|
| Other_name | F36D4.3a.1:c.527_2616+5del | ||||
| F36D4.3b.1:c.527_2616+5del | |||||
| HGVSg | CHROMOSOME_V:g.9386902_9389046del | ||||
| Sequence_details | SMap | S_parent | Sequence | F36D4 | |
| Flanking_sequences | tcggaaaatcacaatctattattgtgagtg | ataatttgttgaaagttttttattaattgt | |||
| Mapping_target | F36D4 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK596_external | ||||
| OK596_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031514 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002036 | |||
| Transcript | F36D4.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F36D4.3b.1:c.527_2616+5del | ||||
| cDNA_position | 582-? | ||||
| CDS_position | 527-? | ||||
| Protein_position | 176-? | ||||
| Intron_number | 4-5/18 | ||||
| Exon_number | 4-5/19 | ||||
| F36D4.3e.1 | VEP_consequence | splice_donor_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1/15 | ||||
| Exon_number | 1/16 | ||||
| F36D4.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F36D4.3a.1:c.527_2616+5del | ||||
| cDNA_position | 576-? | ||||
| CDS_position | 527-? | ||||
| Protein_position | 176-? | ||||
| Intron_number | 4-5/18 | ||||
| Exon_number | 4-5/19 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 4426 | ||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
