WormBase Tree Display for Variation: WBVar00091899
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| WBVar00091899 | Name | Public_name | ok615 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_I:g.9063817_9065238delinsCGGCGACGCACGCTTGATTCTTTCTGCTTGAAAACGGGGAGATTCGACTGAAACAACGATTTTATTATGCGGTCAGTGTTAATCTATACTTACTCTCATTCTGATTTCGTAATCCGTGTAGCGCATTTTTCCAACACCATGAGTGATAGGATTGATAACCTGCAAGTTATCTTGATCTAATTCATTGATTTTTATTCAAACCTCAATTTCAAGGAAGTTGGCCGGCGGGGCATATGCCTCGTCCAGCGTTTGCCGTTTTGAAGGGATCCGCTGAGTTGCCGACGCGCCGGATGCCATTTGCACTGCAAATATTCTAAATTATATCAAAGTTGCTTTGAACTTT | ||||
| Sequence_details | SMap | S_parent | Sequence | W06D4 | |
| Flanking_sequences | ggaggaaaatatggagagagcgttcgtttt | tattagtcttgcatgcaagactaatagagg | |||
| Mapping_target | W06D4 | ||||
| Type_of_mutation | Insertion | CGGCGACGCACGCTTGATTCTTTCTGCTTGAAAACGGGGAGATTCGACTGAAACAACGATTTTATTATGCGGTCAGTGTTAATCTATACTTACTCTCATTCTGATTTCGTAATCCGTGTAGCGCATTTTTCCAACACCATGAGTGATAGGATTGATAACCTGCAAGTTATCTTGATCTAATTCATTGATTTTTATTCAAACCTCAATTTCAAGGAAGTTGGCCGGCGGGGCATATGCCTCGTCCAGCGTTTGCCGTTTTGAAGGGATCCGCTGAGTTGCCGACGCGCCGGATGCCATTTGCACTGCAAATATTCTAAATTATATCAAAGTTGCTTTGAACTTT | |||
| Deletion | |||||
| PCR_product | ok615_external | ||||
| ok615_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035848 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006503 | |||
| WBGene00004298 | |||||
| Transcript | W06D4.6.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| Intron_number | 2/18 | ||||
| Exon_number | 1-2/19 | ||||
| W06D4.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-411 | ||||
| CDS_position | ?-406 | ||||
| Protein_position | ?-136 | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 1-5/6 | ||||
| Interactor | WBInteraction000504719 | ||||
| Isolation | Mutagen | TMP/UV | |||
| Reference | WBPaper00064961 | ||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
