WormBase Tree Display for Variation: WBVar00091961

WBVar00091961 Name: Public_name: ok677
    Other_name: C50H2.2b.1:c.40_540+212del
      C50H2.2a.1:c.303-325_642+212del
    HGVSg: CHROMOSOME_V:g.9905056_9906021del
  Sequence_details: SMap: S_parent: Sequence: C50H2
    Flanking_sequences: ttttcaaacggcagccctcttcacattgat atcctccataatatgatgggtaatatgaag
    Mapping_target: C50H2
    Type_of_mutation: Deletion
    PCR_product: ok677_external
      ok677_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031563
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001211
      WBGene00008244
    Transcript: C50H2.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C50H2.2b.1:c.40_540+212del
        cDNA_position: 40-?
        CDS_position: 40-?
        Protein_position: 14-?
        Intron_number: 1-4/8
        Exon_number: 1-4/9
      C50H2.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C50H2.2a.1:c.303-325_642+212del
        Intron_number: 3-6/10
        Exon_number: 4-6/11
      C50H2.10.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 150-?
        CDS_position: 116-?
        Protein_position: 39-?
        Exon_number: 3-4/4
  Isolation: Mutagen
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele