WormBase Tree Display for Variation: WBVar00092099

WBVar00092099 Name: Public_name: ok820
    Other_name: T11B7.4b.1:c.512+261_590del
      T11B7.4a.1:c.512+261_590del
      T11B7.4e.1:c.512+261_590del
      T11B7.4d.1:c.512+261_590del
      T11B7.4c.1:c.299+261_377del
    HGVSg: CHROMOSOME_IV:g.8855317_8856552del
  Sequence_details: SMap: S_parent: Sequence: T11B7
    Flanking_sequences: ccaaaaattacaagacgttaacgcttttta acatggctcagctggtggtgctggaacaac
    Mapping_target: T11B7
    Type_of_mutation: Deletion
    PCR_product: ok820_external
      ok820_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031648
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001132
      WBGene00011708
    Transcript: T11B7.4e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T11B7.4e.1:c.512+261_590del
        cDNA_position: ?-610
        CDS_position: ?-590
        Protein_position: ?-197
        Intron_number: 5/15
        Exon_number: 6/16
      T11B7.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-642
        Intron_number: 1-2/3
        Exon_number: 1-4/4
      T11B7.4d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T11B7.4d.1:c.512+261_590del
        cDNA_position: ?-604
        CDS_position: ?-590
        Protein_position: ?-197
        Intron_number: 5/17
        Exon_number: 6/18
      T11B7.4c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T11B7.4c.1:c.299+261_377del
        cDNA_position: ?-393
        CDS_position: ?-377
        Protein_position: ?-126
        Intron_number: 4/15
        Exon_number: 5/16
      T11B7.4b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T11B7.4b.1:c.512+261_590del
        cDNA_position: ?-604
        CDS_position: ?-590
        Protein_position: ?-197
        Intron_number: 5/14
        Exon_number: 6/15
      T11B7.4a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T11B7.4a.1:c.512+261_590del
        cDNA_position: ?-604
        CDS_position: ?-590
        Protein_position: ?-197
        Intron_number: 5/11
        Exon_number: 6/12
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0001911 Paper_evidence: WBPaper00055035
        Curator_confirmed: WBPerson1068
  Reference: WBPaper00055035
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele