WormBase Tree Display for Variation: WBVar00092110
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| WBVar00092110 | Name | Public_name | ok832 | ||
|---|---|---|---|---|---|
| Other_name | T04C9.4c.2:c.-1-183_290+239del | ||||
| HGVSg | CHROMOSOME_III:g.5972658_5973846del | ||||
| Sequence_details | SMap | S_parent | Sequence | T04C9 | |
| Flanking_sequences | ccgactccctttggtccgaatttgcgtccg | ggaaaaaaaagtttgaaatctgggagacac | |||
| Mapping_target | T04C9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok832_external | ||||
| ok832_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031656 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003375 | |||
| Transcript | T04C9.4c.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | T04C9.4c.2:c.-1-183_290+239del | ||||
| Intron_number | 1-5/6 | ||||
| Exon_number | 2-5/7 | ||||
| T04C9.4c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 1-4/6 | ||||
| T04C9.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-189 | ||||
| CDS_position | ?-188 | ||||
| Protein_position | ?-63 | ||||
| Intron_number | 2/4 | ||||
| Exon_number | 1-3/5 | ||||
| T04C9.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-189 | ||||
| CDS_position | ?-188 | ||||
| Protein_position | ?-63 | ||||
| Intron_number | 2/4 | ||||
| Exon_number | 1-3/5 | ||||
| T04C9.4a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-191 | ||||
| CDS_position | ?-188 | ||||
| Protein_position | ?-63 | ||||
| Intron_number | 2/3 | ||||
| Exon_number | 1-3/4 | ||||
| T04C9.4d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-191 | ||||
| CDS_position | ?-188 | ||||
| Protein_position | ?-63 | ||||
| Intron_number | 2/4 | ||||
| Exon_number | 1-3/5 | ||||
| T04C9.4a.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-191 | ||||
| CDS_position | ?-188 | ||||
| Protein_position | ?-63 | ||||
| Intron_number | 2/4 | ||||
| Exon_number | 1-3/5 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
