WormBase Tree Display for Variation: WBVar00092127

WBVar00092127 Name: Public_name: ok852
    Other_name: F40F9.1a.2:c.-2-536_608+92del
    HGVSg: CHROMOSOME_V:g.9704822_9706541del
  Sequence_details: SMap: S_parent: Sequence: F40F9
    Flanking_sequences: tttactttcctatcgacaaatatgagtaca aatttaaggtacctaggttatttagtcgaa
    Mapping_target: F40F9
    Type_of_mutation: Deletion
    PCR_product: ok852_external
      ok852_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00029250
      WBStrain00031668
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00009580
    Transcript: F40F9.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-6/8
        Exon_number: 1-6/9
      F40F9.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F40F9.1a.2:c.-2-536_608+92del
        Intron_number: 1-7/9
        Exon_number: 2-7/10
      F40F9.1b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-5/8
        Exon_number: 1-5/9
      F40F9.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-6/9
        Exon_number: 1-6/10
      F40F9.1b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-6/8
        Exon_number: 1-6/9
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele