WormBase Tree Display for Variation: WBVar00092135
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| WBVar00092135 | Name | Public_name | ok860 | ||
|---|---|---|---|---|---|
| Other_name | F07C6.4g.1:c.588+2380_588+4617delinsAAAAATTT | ||||
| F07C6.4f.1:c.1077+2380_1077+4617delinsAAAAATTT | |||||
| F07C6.4h.1:c.588+2380_588+4617delinsAAAAATTT | |||||
| F07C6.4e.1:c.1077+2380_1077+4617delinsAAAAATTT | |||||
| F07C6.4d.1:c.1077+2380_1077+4617delinsAAAAATTT | |||||
| F07C6.4c.2:c.-142+2380_-142+4617delinsAAAAATTT | |||||
| HGVSg | CHROMOSOME_IV:g.12815197_12817434delinsAAAAATTT | ||||
| Sequence_details | SMap | S_parent | Sequence | F07C6 | |
| Flanking_sequences | tcgaaagttcgaaaaaaaaatctgaaaaaa | tgtcctgcaacattttgctttttgcacatt | |||
| Mapping_target | F07C6 | ||||
| Type_of_mutation | Insertion | AAAAATTT | |||
| Deletion | |||||
| PCR_product | ok860_external | ||||
| ok860_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031673 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00008555 | |||
| Transcript | F07C6.4c.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F07C6.4c.2:c.-142+2380_-142+4617delinsAAAAATTT | ||||
| Intron_number | 9/19 | ||||
| F07C6.4h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F07C6.4h.1:c.588+2380_588+4617delinsAAAAATTT | ||||
| Intron_number | 4/11 | ||||
| F07C6.4g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F07C6.4g.1:c.588+2380_588+4617delinsAAAAATTT | ||||
| Intron_number | 4/12 | ||||
| F07C6.4e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F07C6.4e.1:c.1077+2380_1077+4617delinsAAAAATTT | ||||
| Intron_number | 10/16 | ||||
| F07C6.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F07C6.4f.1:c.1077+2380_1077+4617delinsAAAAATTT | ||||
| Intron_number | 10/18 | ||||
| F07C6.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F07C6.4d.1:c.1077+2380_1077+4617delinsAAAAATTT | ||||
| Intron_number | 10/18 | ||||
| F07C6.4b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2/11 | ||||
| Exon_number | 1-2/12 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
