WormBase Tree Display for Variation: WBVar00092140

WBVar00092140 Name: Public_name: ok865
    HGVSg: CHROMOSOME_II:g.6535190_6537612del
  Sequence_details: SMap: S_parent: Sequence: C56E6
    Flanking_sequences: CAACTCCAATTCAACTTTATTCATGTGGAAGGACATTTTTGAATGTGAGT GAAGCAATCAGTCTGATGCGTCTATTACAACCCTGCATTGTTTTGAAAAA
    Mapping_target: C56E6
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035882
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live: Curator_confirmed: WBPerson4025
  Affects: Gene: WBGene00007050
      WBGene00006522
    Transcript: F18C5.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-991
        CDS_position: ?-981
        Protein_position: ?-327
        Intron_number: 2-6/27
        Exon_number: 1-7/28
      C56E6.1.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 11/11
        Exon_number: 12/12
  Isolation: Mutagen: UV/TMP
  Genetics: Mapping_data: In_multi_point: 5584
  Description: Phenotype_not_observed: WBPhenotype:0001208 Paper_evidence: WBPaper00027644
        Curator_confirmed: WBPerson557
        Remark: Animals were not resistant to RNAi as assayed on either pop-1 RNAi or unc-22 RNAi. Paper_evidence: WBPaper00027644
            Curator_confirmed: WBPerson557
        Phenotype_assay: Treatment: Animals reared on both pop-1 and unc-22 feeding plates at 15, 20, 25, and 26C. Paper_evidence: WBPaper00027644
              Curator_confirmed: WBPerson557
  Reference: WBPaper00027644
  Remark: This was suppressed because it overlapped with a corrected genome sequence error feature Feature_evidence: WBsf268310
    This was un-suppressed after examination showed it is not changed by the corrected genome sequence error Curator_confirmed: WBPerson4025
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele