WormBase Tree Display for Variation: WBVar00092147

WBVar00092147 Name: Public_name: ok872
    Other_name: Y38E10A.21d.1:c.323-632_708-372del
      Y38E10A.21c.1:c.119-632_504-372del
      Y38E10A.21a.1:c.47-632_432-372del
    HGVSg: CHROMOSOME_II:g.12668595_12670698del
  Sequence_details: SMap: S_parent: Sequence: Y38E10A
    Flanking_sequences: AATTTGAATGGCAAGACGGGGAGAATAACATACGCCCAAAAAAAAATTCA TGTGAGAAATTTTTTTTTTCAAAAGAATCGGCGGGTGATGAAGTGGTGAA
    Mapping_target: Y38E10A
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031678
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live: Curator_confirmed: WBPerson4025
  Affects: Gene: WBGene00004347
      WBGene00014872
    Transcript: Y38E10A.21a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38E10A.21a.1:c.47-632_432-372del
        Intron_number: 2-5/7
        Exon_number: 3-5/8
      Y38E10A.21d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38E10A.21d.1:c.323-632_708-372del
        Intron_number: 4-7/8
        Exon_number: 5-7/9
      Y38E10A.21b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-3/5
      Y38E10A.21c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38E10A.21c.1:c.119-632_504-372del
        Intron_number: 2-5/7
        Exon_number: 3-5/8
    Pseudogene: Y38E10A.t2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: UV/TMP
  Genetics: Mapping_data: In_multi_point: 5028
  Remark: This was suppressed because it overlapped with a corrected genome sequence error feature Feature_evidence: WBsf268176
    This was un-suppressed after examination showed it is not changed by the corrected genome sequence error Curator_confirmed: WBPerson4025
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele