WormBase Tree Display for Variation: WBVar00092159

WBVar00092159 Evidence: Paper_evidence: WBPaper00038481
  Name: Public_name: ok884
    Other_name: F32F2.1d.1:c.1011_2029-25del
      F32F2.1a.2:c.912_1930-25del
      F32F2.1c.1:c.1029_2047-25del
      F32F2.1b.1:c.1071_2089-25del
      F32F2.1a.3:c.912_1930-25del
      F32F2.1a.1:c.912_1930-25del
      F32F2.1e.1:c.480_1498-25del
    HGVSg: CHROMOSOME_V:g.13275710_13277046del
  Sequence_details: SMap: S_parent: Sequence: F32F2
    Flanking_sequences: tgatatctatattagttaaaataaaatatt tccacgaagcatctgctcatctgaaaataa
    Mapping_target: F32F2
    Type_of_mutation: Deletion
    PCR_product: ok884_external
      ok884_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031688
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00235322
      WBGene00009337
    Transcript: F32F2.4.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F32F2.1h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-2/8
        Exon_number: 1-2/9
      F32F2.1a.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1a.3:c.912_1930-25del
        cDNA_position: 972-?
        CDS_position: 912-?
        Protein_position: 304-?
        Intron_number: 7-9/16
        Exon_number: 7-9/17
      F32F2.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1d.1:c.1011_2029-25del
        cDNA_position: 1011-?
        CDS_position: 1011-?
        Protein_position: 337-?
        Intron_number: 7-9/15
        Exon_number: 7-9/16
      F32F2.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1a.1:c.912_1930-25del
        cDNA_position: 1163-?
        CDS_position: 912-?
        Protein_position: 304-?
        Intron_number: 8-10/17
        Exon_number: 8-10/18
      F32F2.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1b.1:c.1071_2089-25del
        cDNA_position: 1071-?
        CDS_position: 1071-?
        Protein_position: 357-?
        Intron_number: 7-9/15
        Exon_number: 7-9/16
      F32F2.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1c.1:c.1029_2047-25del
        cDNA_position: 1029-?
        CDS_position: 1029-?
        Protein_position: 343-?
        Intron_number: 7-9/15
        Exon_number: 7-9/16
      F32F2.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1a.2:c.912_1930-25del
        cDNA_position: 1078-?
        CDS_position: 912-?
        Protein_position: 304-?
        Intron_number: 8-10/17
        Exon_number: 8-10/18
      F32F2.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F32F2.1e.1:c.480_1498-25del
        cDNA_position: 480-?
        CDS_position: 480-?
        Protein_position: 160-?
        Intron_number: 3-5/11
        Exon_number: 3-5/12
    Interactor: WBInteraction000520143
  Isolation: Mutagen: UV/TMP
  Genetics: Mapping_data: In_multi_point: 5548
  Description: Phenotype: WBPhenotype:0002587 Paper_evidence: WBPaper00058750
        Curator_confirmed: WBPerson43910
    Phenotype_not_observed: WBPhenotype:0000436 Paper_evidence: WBPaper00038481
        Curator_confirmed: WBPerson712
        Remark: While PXL-1 is properly localized at dense bodies in uig-1 mutant animals. In uig-1 mutant worms, PXL-1 was properly localized to the pharyngeal muscle membrane (data not shown). Paper_evidence: WBPaper00038481
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0005451 PATO:0000460 Paper_evidence: WBPaper00038481
                Curator_confirmed: WBPerson712
  Reference: WBPaper00038481
    WBPaper00058750
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele