WormBase Tree Display for Variation: WBVar00092178
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| WBVar00092178 | Name | Public_name | ok905 | ||
|---|---|---|---|---|---|
| Other_name | T27C4.4b.1:c.2414-94_2527-292del | ||||
| T27C4.4e.1:c.2009-94_2122-292del | |||||
| T27C4.4b.2:c.2414-94_2527-292del | |||||
| T27C4.4a.1:c.2414-94_2527-292del | |||||
| T27C4.4d.1:c.2414-94_2527-292del | |||||
| HGVSg | CHROMOSOME_V:g.3708807_3709746del | ||||
| Sequence_details | SMap | S_parent | Sequence | T27C4 | |
| Flanking_sequences | catattttttttgctaaaaaaattcatttt | aaaattcaaagaatgcgtattacacattat | |||
| Mapping_target | T27C4 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok905_external | ||||
| ok905_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035960 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00220102 | |||
| WBGene00003025 | |||||
| Transcript | T27C4.4d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | T27C4.4d.1:c.2414-94_2527-292del | ||||
| Intron_number | 5-6/8 | ||||
| Exon_number | 6/9 | ||||
| T27C4.7 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| T27C4.4b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T27C4.4b.2:c.2414-94_2527-292del | ||||
| Intron_number | 5-6/8 | ||||
| Exon_number | 6/9 | ||||
| T27C4.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T27C4.4a.1:c.2414-94_2527-292del | ||||
| Intron_number | 5-6/9 | ||||
| Exon_number | 6/10 | ||||
| T27C4.4e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T27C4.4e.1:c.2009-94_2122-292del | ||||
| Intron_number | 2-3/4 | ||||
| Exon_number | 3/5 | ||||
| T27C4.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T27C4.4b.1:c.2414-94_2527-292del | ||||
| Intron_number | 5-6/8 | ||||
| Exon_number | 6/9 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
