WormBase Tree Display for Variation: WBVar00092179

WBVar00092179 Name: Public_name: ok906
    Other_name: T27C4.4e.1:c.2009-11_2122-135delinsTTTTTTATCGATTAACAAAA
      T27C4.4b.1:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
      T27C4.4b.2:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
      T27C4.4a.1:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
      T27C4.4d.1:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
    HGVSg: CHROMOSOME_V:g.3708890_3709903delinsTTTTTTATCGATTAACAAAA
  Sequence_details: SMap: S_parent: Sequence: T27C4
    Flanking_sequences: tcgaattttttggctcaaatctgatttata aatttccgtaaatcgacacaagcggtacag
    Mapping_target: T27C4
    Type_of_mutation: Insertion: TTTTTTATCGATTAACAAAA
      Deletion
    PCR_product: ok906_external
      ok906_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035948
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00220102
      WBGene00003025
    Transcript: T27C4.4d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T27C4.4d.1:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
        Intron_number: 5-6/8
        Exon_number: 6/9
      T27C4.7 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T27C4.4b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T27C4.4b.2:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
        Intron_number: 5-6/8
        Exon_number: 6/9
      T27C4.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T27C4.4a.1:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
        Intron_number: 5-6/9
        Exon_number: 6/10
      T27C4.4e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T27C4.4e.1:c.2009-11_2122-135delinsTTTTTTATCGATTAACAAAA
        Intron_number: 2-3/4
        Exon_number: 3/5
      T27C4.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T27C4.4b.1:c.2414-11_2527-135delinsTTTTTTATCGATTAACAAAA
        Intron_number: 5-6/8
        Exon_number: 6/9
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele