WormBase Tree Display for Variation: WBVar00092198
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| WBVar00092198 | Name | Public_name | ok927 | ||
|---|---|---|---|---|---|
| Other_name | C16C10.12d.1:c.664_804-99del | ||||
| C16C10.12b.1:c.880_1020-99del | |||||
| C16C10.12c.1:c.706_846-99del | |||||
| C16C10.12a.1:c.922_1062-99del | |||||
| HGVSg | CHROMOSOME_III:g.4148911_4149545del | ||||
| Sequence_details | SMap | S_parent | Sequence | C16C10 | |
| Flanking_sequences | catcatttactatatataaagcgcttattc | aattgtttctcgactctttgtctcgttgtt | |||
| Mapping_target | C16C10 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok927_external | ||||
| ok927_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031716 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00007631 | |||
| Transcript | C16C10.12a.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C16C10.12a.1:c.922_1062-99del | ||||
| cDNA_position | 969-? | ||||
| CDS_position | 922-? | ||||
| Protein_position | 308-? | ||||
| Intron_number | 7/12 | ||||
| Exon_number | 7/13 | ||||
| C16C10.12d.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C16C10.12d.1:c.664_804-99del | ||||
| cDNA_position | 664-? | ||||
| CDS_position | 664-? | ||||
| Protein_position | 222-? | ||||
| Intron_number | 4/8 | ||||
| Exon_number | 4/9 | ||||
| C16C10.12c.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C16C10.12c.1:c.706_846-99del | ||||
| cDNA_position | 706-? | ||||
| CDS_position | 706-? | ||||
| Protein_position | 236-? | ||||
| Intron_number | 4/8 | ||||
| Exon_number | 4/9 | ||||
| C16C10.12b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C16C10.12b.1:c.880_1020-99del | ||||
| cDNA_position | 880-? | ||||
| CDS_position | 880-? | ||||
| Protein_position | 294-? | ||||
| Intron_number | 6/10 | ||||
| Exon_number | 6/11 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
