WormBase Tree Display for Variation: WBVar00092206

WBVar00092206 Name: Public_name: ok935
    Other_name: K06B9.5a.1:c.250+689_551del
      K06B9.5b.1:c.64+126_365del
    HGVSg: CHROMOSOME_IV:g.4201596_4203215del
  Sequence_details: SMap: S_parent: Sequence: K06B9
    Flanking_sequences: atcaatttctgtcgtatttcccatgcgaac cgcaaaatattgttggactggcaaaaagag
    Mapping_target: K06B9
    Type_of_mutation: Deletion
    PCR_product: ok935_external
      ok935_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031722
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00003938
    Transcript: K06B9.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K06B9.5b.1:c.64+126_365del
        cDNA_position: ?-365
        CDS_position: ?-365
        Protein_position: ?-122
        Intron_number: 1-3/6
        Exon_number: 2-4/7
      K06B9.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K06B9.5a.1:c.250+689_551del
        cDNA_position: ?-551
        CDS_position: ?-551
        Protein_position: ?-184
        Intron_number: 2-4/8
        Exon_number: 3-5/9
    Interactor (12)
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000183 Paper_evidence: WBPaper00028561
        Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0005784 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
            WBbt:0005738 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
          Life_stage: WBls:0000057 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
      WBPhenotype:0000961 Paper_evidence: WBPaper00028561
        Curator_confirmed: WBPerson712
        Remark: Animals had decreased numbers of unc-4::gfp expressing VC motorneurons compared to wild type. Paper_evidence: WBPaper00028561
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0005304 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
          Life_stage: WBls:0000027 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: unc-4::gfp Paper_evidence: WBPaper00028561
              Curator_confirmed: WBPerson712
      WBPhenotype:0001180 Paper_evidence: WBPaper00028561
        Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0005784 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
          Life_stage: WBls:0000057 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: Germline corpses were quantified in staged adults (generally 24 hours after L4/adult molt) stained with SYTO12. Paper_evidence: WBPaper00028561
              Curator_confirmed: WBPerson712
          Genotype: ced-10(RNAi) Paper_evidence: WBPaper00028561
              Curator_confirmed: WBPerson712
      WBPhenotype:0001181 Paper_evidence: WBPaper00028561
        Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0005738 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
          Life_stage: WBls:0000057 PATO:0000460 Paper_evidence: WBPaper00028561
                Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: Cell corpses were observed by Nomarski optics. Paper_evidence: WBPaper00028561
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000062 Paper_evidence: WBPaper00023860
        Curator_confirmed: WBPerson712
      WBPhenotype:0000517 Paper_evidence: WBPaper00023860
        Curator_confirmed: WBPerson712
      WBPhenotype:0000520 Paper_evidence: WBPaper00023860
        Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Paper_evidence: WBPaper00023860
        Curator_confirmed: WBPerson712
  Reference: WBPaper00028561
    WBPaper00023860
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele