WormBase Tree Display for Variation: WBVar00092224
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| WBVar00092224 | Name | Public_name | ok953 | ||
|---|---|---|---|---|---|
| Other_name | R03E9.3a.1:c.1171+52_1569del | ||||
| R03E9.3c.1:c.1171+52_1569del | |||||
| R03E9.3d.1:c.1171+52_1569del | |||||
| R03E9.3b.1:c.1171+52_1569del | |||||
| HGVSg | CHROMOSOME_X:g.6753309_6754504del | ||||
| Sequence_details | SMap | S_parent | Sequence | R03E9 | |
| Flanking_sequences | aataccagtgtaaaatcgcacttccagaaa | tggcagaatattgcttttgtagacaccact | |||
| Mapping_target | R03E9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok953_external | ||||
| ok953_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031734 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019844 | |||
| Transcript | R03E9.3d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | R03E9.3d.1:c.1171+52_1569del | ||||
| cDNA_position | ?-1569 | ||||
| CDS_position | ?-1569 | ||||
| Protein_position | ?-523 | ||||
| Intron_number | 8-11/16 | ||||
| Exon_number | 9-12/17 | ||||
| R03E9.3c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R03E9.3c.1:c.1171+52_1569del | ||||
| cDNA_position | ?-1611 | ||||
| CDS_position | ?-1569 | ||||
| Protein_position | ?-523 | ||||
| Intron_number | 9-12/20 | ||||
| Exon_number | 10-13/21 | ||||
| R03E9.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R03E9.3a.1:c.1171+52_1569del | ||||
| cDNA_position | ?-1611 | ||||
| CDS_position | ?-1569 | ||||
| Protein_position | ?-523 | ||||
| Intron_number | 9-12/21 | ||||
| Exon_number | 10-13/22 | ||||
| R03E9.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R03E9.3b.1:c.1171+52_1569del | ||||
| cDNA_position | ?-1569 | ||||
| CDS_position | ?-1569 | ||||
| Protein_position | ?-523 | ||||
| Intron_number | 8-11/17 | ||||
| Exon_number | 9-12/18 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 5031 | ||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
