WormBase Tree Display for Variation: WBVar00092234

WBVar00092234 Name: Public_name: ok963
    Other_name: F42A6.7a.1:c.314_*63delinsTCTTAATG
      F42A6.7c.2:c.200_*63delinsTCTTAATG
      F42A6.7c.1:c.200_*63delinsTCTTAATG
      F42A6.7b.2:c.200_*63delinsTCTTAATG
      F42A6.7b.1:c.200_*63delinsTCTTAATG
      F42A6.7a.2:c.314_*63delinsTCTTAATG
      F42A6.7b.3:c.200_*63delinsTCTTAATG
      F42A6.7b.4:c.200_*63delinsTCTTAATG
    HGVSg: CHROMOSOME_IV:g.3337170_3338012delinsCATTAAGA
  Sequence_details: SMap: S_parent: Sequence: F42A6
    Flanking_sequences: agcagagcaaaaatggttgagaagatcgat tcttatcatcacgtggcacggcacgcttcg
    Mapping_target: F42A6
    Type_of_mutation: Insertion: CATTAAGA
      Deletion
    PCR_product: ok963_external
      ok963_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035959
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001999
    Transcript: F42A6.7d.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 457-?
        CDS_position: 314-?
        Protein_position: 105-?
        Intron_number: 3/3
        Exon_number: 3-4/4
      F42A6.7b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7b.2:c.200_*63delinsTCTTAATG
        cDNA_position: 331-1124
        CDS_position: 200-?
        Protein_position: 67-?
        Intron_number: 3/4
        Exon_number: 3-5/5
      F42A6.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7a.1:c.314_*63delinsTCTTAATG
        cDNA_position: 453-1243
        CDS_position: 314-?
        Protein_position: 105-?
        Intron_number: 3/4
        Exon_number: 3-5/5
      F42A6.7c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7c.2:c.200_*63delinsTCTTAATG
        cDNA_position: 289-1079
        CDS_position: 200-?
        Protein_position: 67-?
        Intron_number: 2/3
        Exon_number: 2-4/4
      F42A6.7d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 493-?
        CDS_position: 314-?
        Protein_position: 105-?
        Intron_number: 4/4
        Exon_number: 4-5/5
      F42A6.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7b.1:c.200_*63delinsTCTTAATG
        cDNA_position: 499-1292
        CDS_position: 200-?
        Protein_position: 67-?
        Intron_number: 4/5
        Exon_number: 4-6/6
      F42A6.7a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7a.2:c.314_*63delinsTCTTAATG
        cDNA_position: 515-1305
        CDS_position: 314-?
        Protein_position: 105-?
        Intron_number: 4/5
        Exon_number: 4-6/6
      F42A6.7b.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7b.4:c.200_*63delinsTCTTAATG
        cDNA_position: 510-1303
        CDS_position: 200-?
        Protein_position: 67-?
        Intron_number: 2/3
        Exon_number: 2-4/4
      F42A6.7c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7c.1:c.200_*63delinsTCTTAATG
        cDNA_position: 345-1135
        CDS_position: 200-?
        Protein_position: 67-?
        Intron_number: 3/4
        Exon_number: 3-5/5
      F42A6.7b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42A6.7b.3:c.200_*63delinsTCTTAATG
        cDNA_position: 459-1252
        CDS_position: 200-?
        Protein_position: 67-?
        Intron_number: 3/4
        Exon_number: 3-5/5
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele