WormBase Tree Display for Variation: WBVar00092238
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| WBVar00092238 | Name | Public_name | ok967 | ||
|---|---|---|---|---|---|
| Other_name | C31H5.3a.1:c.794_*141delinsGCTATTATTTCTTATAATGCCCCGCATTTATTTGTATAATTTTTTCTAATTCAATAGAGTAAGAGTCAAGAAATTCATATCTCTTGTTGCTTCTTTTTAAATTTTACATTTAGAGCCAATTTGTGATTTTAAGTACAAATGTATATCTTTATTTCGTCTTTTTAAAATAACATATTCACAATCTTCATGTCTCTTTGCGTTTTTATGATTATGGTTGCTTG | ||||
| C31H5.3b.1:c.812_*141delinsGCTATTATTTCTTATAATGCCCCGCATTTATTTGTATAATTTTTTCTAATTCAATAGAGTAAGAGTCAAGAAATTCATATCTCTTGTTGCTTCTTTTTAAATTTTACATTTAGAGCCAATTTGTGATTTTAAGTACAAATGTATATCTTTATTTCGTCTTTTTAAAATAACATATTCACAATCTTCATGTCTCTTTGCGTTTTTATGATTATGGTTGCTTG | |||||
| HGVSg | CHROMOSOME_I:g.9031291_9032831delinsCAAGCAACCATAATCATAAAAACGCAAAGAGACATGAAGATTGTGAATATGTTATTTTAAAAAGACGAAATAAAGATATACATTTGTACTTAAAATCACAAATTGGCTCTAAATGTAAAATTTAAAAAGAAGCAACAAGAGATATGAATTTCTTGACTCTTACTCTATTGAATTAGAAAAAATTATACAAATAAATGCGGGGCATTATAAGAAATAATAGC | ||||
| Sequence_details | SMap | S_parent | Sequence | C31H5 | |
| Flanking_sequences | tatatgtacaacaaagcaaaaacaattgaa | cgcctaaaatgttttgctatcaagctgtat | |||
| Mapping_target | C31H5 | ||||
| Type_of_mutation | Insertion | CAAGCAACCATAATCATAAAAACGCAAAGAGACATGAAGATTGTGAATATGTTATTTTAAAAAGACGAAATAAAGATATACATTTGTACTTAAAATCACAAATTGGCTCTAAATGTAAAATTTAAAAAGAAGCAACAAGAGATATGAATTTCTTGACTCTTACTCTATTGAATTAGAAAAAATTATACAAATAAATGCGGGGCATTATAAGAAATAATAGC | |||
| Deletion | |||||
| PCR_product | ok967_external | ||||
| ok967_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035817 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000058 | |||
| Transcript | C31H5.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C31H5.3b.1:c.812_*141delinsGCTATTATTTCTTATAATGCCCCGCATTTATTTGTATAATTTTTTCTAATTCAATAGAGTAAGAGTCAAGAAATTCATATCTCTTGTTGCTTCTTTTTAAATTTTACATTTAGAGCCAATTTGTGATTTTAAGTACAAATGTATATCTTTATTTCGTCTTTTTAAAATAACATATTCACAATCTTCATGTCTCTTTGCGTTTTTATGATTATGGTTGCTTG | ||||
| cDNA_position | 828-1840 | ||||
| CDS_position | 812-? | ||||
| Protein_position | 271-? | ||||
| Intron_number | 6-9/10 | ||||
| Exon_number | 6-11/11 | ||||
| C31H5.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C31H5.3a.1:c.794_*141delinsGCTATTATTTCTTATAATGCCCCGCATTTATTTGTATAATTTTTTCTAATTCAATAGAGTAAGAGTCAAGAAATTCATATCTCTTGTTGCTTCTTTTTAAATTTTACATTTAGAGCCAATTTGTGATTTTAAGTACAAATGTATATCTTTATTTCGTCTTTTTAAAATAACATATTCACAATCTTCATGTCTCTTTGCGTTTTTATGATTATGGTTGCTTG | ||||
| cDNA_position | 829-1841 | ||||
| CDS_position | 794-? | ||||
| Protein_position | 265-? | ||||
| Intron_number | 6-9/10 | ||||
| Exon_number | 6-11/11 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
