WormBase Tree Display for Variation: WBVar00092244
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| WBVar00092244 | Name | Public_name | ok973 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Other_name | B0302.1a.1:c.1634-100_2679delinsTGATGGTGCTCA | ||||||||
| B0302.1b.1:c.1445-347_2358delinsTGATGGTGCTCA | |||||||||
| HGVSg | CHROMOSOME_X:g.17190201_17191530delinsTGATGGTGCTCA | ||||||||
| Sequence_details | SMap | S_parent | Sequence | B0302 | |||||
| Flanking_sequences | caacatttcgattaagctagttgtgcaaaa | acttcggcaccatcaacttcggtggtaacg | |||||||
| Mapping_target | B0302 | ||||||||
| Type_of_mutation | Insertion | TGATGGTGCTCA | |||||||
| Deletion | |||||||||
| PCR_product | ok973_external | ||||||||
| ok973_internal | |||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00036067 | ||||||||
| Laboratory | RB | ||||||||
| Person | WBPerson46 | ||||||||
| KO_consortium_allele | |||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00002207 | |||||||
| Transcript | B0302.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | B0302.1b.1:c.1445-347_2358delinsTGATGGTGCTCA | ||||||||
| cDNA_position | ?-2366 | ||||||||
| CDS_position | ?-2358 | ||||||||
| Protein_position | ?-786 | ||||||||
| Intron_number | 9-10/13 | ||||||||
| Exon_number | 10-11/14 | ||||||||
| B0302.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | B0302.1a.1:c.1634-100_2679delinsTGATGGTGCTCA | ||||||||
| cDNA_position | ?-2687 | ||||||||
| CDS_position | ?-2679 | ||||||||
| Protein_position | ?-893 | ||||||||
| Intron_number | 11-13/16 | ||||||||
| Exon_number | 12-14/17 | ||||||||
| Isolation | Mutagen | UV/TMP | |||||||
| Description | Phenotype | WBPhenotype:0002589 | Paper_evidence | WBPaper00064375 | |||||
| Curator_confirmed | WBPerson87 | ||||||||
| Remark | dopaminergic neuroprotection from a-syn-induced dopaminergic neurodegeneration | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0004009 | PATO:0000460 | Paper_evidence | WBPaper00064375 | ||||
| Curator_confirmed | WBPerson87 | ||||||||
| WBbt:0004007 | PATO:0000460 | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| WBbt:0004938 | PATO:0000460 | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| WBbt:0004937 | PATO:0000460 | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| WBbt:0004933 | PATO:0000460 | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| WBbt:0004931 | PATO:0000460 | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| Phenotype_assay | Control_strain | WBStrain00035179 | Paper_evidence | WBPaper00064375 | |||||
| Curator_confirmed | WBPerson87 | ||||||||
| Genotype | baIn11[Pdat-1:: -syn (human, wildtype), Pdat-1::GFP] | Paper_evidence | WBPaper00064375 | ||||||
| Curator_confirmed | WBPerson87 | ||||||||
| Disease_info | Modifies_disease | DOID:14330 | |||||||
| Modifies_disease_in_annotation | WBDOannot00001348 | ||||||||
| WBDOannot00001349 | |||||||||
| Reference | WBPaper00064995 | ||||||||
| WBPaper00064375 | |||||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||||
| Method | KO_consortium_allele |
