WormBase Tree Display for Variation: WBVar00092250

WBVar00092250 Evidence: Paper_evidence: WBPaper00032221
  Name: Public_name: ok979
    Other_name: C51E3.7a.1:c.418-139_1349del
      C51E3.7c.1:c.43-139_974del
    HGVSg: CHROMOSOME_V:g.10170675_10172252del
  Sequence_details: SMap: S_parent: Sequence: C51E3
    Flanking_sequences: ttcatttgccattcaaagtgagaacagttt gaaagcaacggaaagacgagacgaaaggaa
    Mapping_target: C51E3
    Type_of_mutation: Deletion
    PCR_product: ok979_external
      ok979_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035966
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001172
    Transcript: C51E3.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C51E3.7a.1:c.418-139_1349del
        cDNA_position: ?-1351
        CDS_position: ?-1349
        Protein_position: ?-450
        Intron_number: 3-6/9
        Exon_number: 4-7/10
      C51E3.7c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C51E3.7c.1:c.43-139_974del
        cDNA_position: ?-974
        CDS_position: ?-974
        Protein_position: ?-325
        Intron_number: 1-4/6
        Exon_number: 2-5/7
    Interactor: WBInteraction000009144
      WBInteraction000518053
      WBInteraction000518554
  Isolation: Mutagen: UV/TMP
  Description: Phenotype_not_observed: WBPhenotype:0001818 Paper_evidence: WBPaper00032221
        Curator_confirmed: WBPerson712
        Remark: HSNs showed robust and rhythmic activity. Paper_evidence: WBPaper00032221
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0006830 PATO:0000460 Paper_evidence: WBPaper00032221
                Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: Animals were assayed 24 hr after the late fourth larval (L4) stage at 20.5C 0.5C. Paper_evidence: WBPaper00032221
              Curator_confirmed: WBPerson712
          Genotype: Cameleon IjIs25[myo-3::YC2.0] Paper_evidence: WBPaper00032221
              Curator_confirmed: WBPerson712
  Disease_info: Models_disease: DOID:1574
    Models_disease_in_annotation: WBDOannot00000710
  Reference: WBPaper00032221
    WBPaper00036237
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele