WormBase Tree Display for Variation: WBVar00092270
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| WBVar00092270 | Evidence | Paper_evidence | WBPaper00038142 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ok999 | |||||
| Other_name | C29E6.2a.1:c.494+131_1398del | ||||||
| C29E6.2b.1:c.491+131_1395del | |||||||
| HGVSg | CHROMOSOME_IV:g.11865611_11866944del | ||||||
| Sequence_details | SMap | S_parent | Sequence | C29E6 | |||
| Flanking_sequences | atttaaaatttttaaatacaaatatcaatg | gtcaatatggtagatcgagatcaaaacact | |||||
| Mapping_target | C29E6 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | ok999_external | ||||||
| ok999_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00031758 | ||||||
| WBStrain00034933 | |||||||
| Laboratory | RB | ||||||
| Person | WBPerson46 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00007801 | |||||
| Transcript | C29E6.2a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C29E6.2a.1:c.494+131_1398del | ||||||
| cDNA_position | ?-1413 | ||||||
| CDS_position | ?-1398 | ||||||
| Protein_position | ?-466 | ||||||
| Intron_number | 3/12 | ||||||
| Exon_number | 4/13 | ||||||
| C29E6.2b.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C29E6.2b.1:c.491+131_1395del | ||||||
| cDNA_position | ?-1416 | ||||||
| CDS_position | ?-1395 | ||||||
| Protein_position | ?-465 | ||||||
| Intron_number | 3/12 | ||||||
| Exon_number | 4/13 | ||||||
| Interactor | WBInteraction000519486 | ||||||
| WBInteraction000519492 | |||||||
| WBInteraction000519493 | |||||||
| WBInteraction000519500 | |||||||
| WBInteraction000519501 | |||||||
| Isolation | Mutagen | UV/TMP | |||||
| Genetics | Mapping_data | In_multi_point | 5308 | ||||
| Description | Phenotype (14) | ||||||
| Phenotype_not_observed | WBPhenotype:0001273 | Paper_evidence | WBPaper00038142 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | Using a thermal barrier assay to test heat avoidance, no defect in heat avoidance was observed. | Paper_evidence | WBPaper00038142 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00038142 | ||||||
| WBPaper00043908 | |||||||
| WBPaper00065340 | |||||||
| WBPaper00065312 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
