WormBase Tree Display for Variation: WBVar00092275

WBVar00092275 Name: Public_name: ok1004
    Other_name: R57.1b.1:c.434-54_1032-16delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
      R57.1a.1:c.491-54_1089-16delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
      R57.1c.1:c.434-54_1032-16delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
    HGVSg: CHROMOSOME_X:g.304132_305653delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
  Sequence_details: SMap: S_parent: Sequence: R57
    Flanking_sequences: caaaagtcgtgtcaccctcagcgactgtgc atagcaccttttcagacgaattagaaatgt
    Mapping_target: R57
    Type_of_mutation: Insertion: TCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
      Deletion
    PCR_product: ok1004_external
      ok1004_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031761
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00020082
    Transcript: R57.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R57.1b.1:c.434-54_1032-16delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
        Intron_number: 3-7/9
        Exon_number: 4-7/10
      R57.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R57.1c.1:c.434-54_1032-16delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
        Intron_number: 3-7/13
        Exon_number: 4-7/14
      R57.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R57.1a.1:c.491-54_1089-16delinsCTCTTCTTTTCCGAAAGTGGTGACGTCATTTATC
        Intron_number: 4-8/14
        Exon_number: 5-8/15
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000031 Paper_evidence: WBPaper00049244
        Curator_confirmed: WBPerson683
        Remark: gcp-2.1(ok1004) slow growth and sterility on E. coli when bacterial folate synthesis is inhibited by sulfamethoxazole (SMX). No phenotype on untreated E. coli Paper_evidence: WBPaper00049244
            Curator_confirmed: WBPerson683
        Rescued_by_transgene: WBTransgene00023023
        Affected_by: Molecule: WBMol:00000373 Paper_evidence: WBPaper00049244
              Curator_confirmed: WBPerson683
      WBPhenotype:0000688 Paper_evidence: WBPaper00049244
        Curator_confirmed: WBPerson683
        Remark: gcp-2.1(ok1004) slow growth and sterility on E. coli when bacterial folate synthesis is inhibited by sulfamethoxazole (SMX). No phenotype on untreated E. coli Paper_evidence: WBPaper00049244
            Curator_confirmed: WBPerson683
        Rescued_by_transgene: WBTransgene00023023
        Affected_by: Molecule: WBMol:00000373 Paper_evidence: WBPaper00049244
              Curator_confirmed: WBPerson683
  Reference: WBPaper00049244
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele