WormBase Tree Display for Variation: WBVar00092433

WBVar00092433 Name: Public_name: ok1177
    Other_name: M04C9.5a.1:c.223-39_1193-120del
      M04C9.5b.1:c.223-39_1193-120del
    HGVSg: CHROMOSOME_I:g.9360865_9362583del
  Sequence_details: SMap: S_parent: Sequence: M04C9
    Flanking_sequences: atggacaattggatgcattttctgtagttg gacttgctcataccttatttgaattgtgat
    Mapping_target: M04C9
    Type_of_mutation: Deletion
    PCR_product: OK1177_external
      OK1177_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031850
      WBStrain00056606
      WBStrain00056607
    Laboratory: RB
      CZ
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00050921
      WBGene00001121
    Transcript: M04C9.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M04C9.5b.1:c.223-39_1193-120del
        Intron_number: 4-9/12
        Exon_number: 5-9/13
      M04C9.8
      M04C9.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M04C9.5a.1:c.223-39_1193-120del
        Intron_number: 4-9/9
        Exon_number: 5-9/10
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000615 Paper_evidence: WBPaper00029264
        Curator_confirmed: WBPerson291
        Remark: Amphid and phasmid cilia are longer, more dispersed, misdirected and sometimes turn back towards the transition zone Paper_evidence: WBPaper00029264
            Curator_confirmed: WBPerson291
  Reference: WBPaper00029264
    WBPaper00065994
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele