WormBase Tree Display for Variation: WBVar00092677
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| WBVar00092677 | Name | Public_name | ok1463 | ||
|---|---|---|---|---|---|
| Other_name | CE45051:p.Ile166GlufsTer57 | ||||
| T21C9.2b.1:c.494_1232del | |||||
| CE31365:p.Ile475GlufsTer57 | |||||
| T21C9.2a.1:c.1421_2159del | |||||
| HGVSg | CHROMOSOME_V:g.10567816_10568554del | ||||
| Sequence_details | SMap | S_parent | Sequence | T21C9 | |
| Flanking_sequences | agcttgttaacagatcttccaagacctcca | tcgttccagcttctggcttcacaccgagct | |||
| Mapping_target | T21C9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok1463_external | ||||
| ok1463_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036224 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006934 | |||
| Transcript | T21C9.2b.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | T21C9.2b.1:c.494_1232del | ||||
| HGVSp | CE45051:p.Ile166GlufsTer57 | ||||
| cDNA_position | 494-1232 | ||||
| CDS_position | 494-1232 | ||||
| Protein_position | 165-411 | ||||
| Exon_number | 1/4 | ||||
| Codon_change | aTGATTCAAGCCGAAGGAGAACTTTCTGCTGTCCTACTTGGATTGATGAGAATGCGAAAGTACTCATTTATTGCAGTTTTAAGAGAGGAAATTATTGAAGGAGTCAAAAGTGTAATGCGACAAGTTATTAAAAATCAAATTCTAAATAATGGAGTTGATTTGAACGATTTTGATCCTAGTTTGACACAGTTGGGAGAGCCAGTACGAAGAATGAAACATGCTGATTTTTTGAAAACTGTGAAAGCTGTTATGGATGAAGAGTTCTACTTTTGTAAACGATTGGAAGCTCTACAAGATATTCTACTGGAAACTGTTGAACGAGCAAATCCTCTACATCGACATGGCTCTGAAGATATTATAGTTGAGAGAATCGAAGAAGCAAAAGATATTCACGAATCTGAGTCTGACGATGAAGTTGGTACAACTTTTTCCAAATCAGCTAGTTCAGGAGGATTCTCCGTCGGTGGTTCGGCTTTATCCTCTAACGCGTCAGCTACCACTCTTCTTTCGATTGAAGTCAGATCAGAAGCCTTTTTACGACACGTGCTCCCATTGATCGCAGAATTCGGTCATCAATGTGCGCAACAACGGATTTCACGATTGCTCATTGCTCGGGCCAAAAATGCATCAGTGACAGAAGCTACTACACCTACCCAACTATCTGAATGCATTAAACTCGTTAAAGAATTTCAATCCAAGTGTGACAAGGAAGGATGGTATTCCACTCAGAATCAAAAAGTt/at | ||||
| Amino_acid_change | MIQAEGELSAVLLGLMRMRKYSFIAVLREEIIEGVKSVMRQVIKNQILNNGVDLNDFDPSLTQLGEPVRRMKHADFLKTVKAVMDEEFYFCKRLEALQDILLETVERANPLHRHGSEDIIVERIEEAKDIHESESDDEVGTTFSKSASSGGFSVGGSALSSNASATTLLSIEVRSEAFLRHVLPLIAEFGHQCAQQRISRLLIARAKNASVTEATTPTQLSECIKLVKEFQSKCDKEGWYSTQNQKV/X | ||||
| T21C9.2a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T21C9.2a.1:c.1421_2159del | ||||
| HGVSp | CE31365:p.Ile475GlufsTer57 | ||||
| cDNA_position | 1434-2172 | ||||
| CDS_position | 1421-2159 | ||||
| Protein_position | 474-720 | ||||
| Exon_number | 7/11 | ||||
| Codon_change | aTGATTCAAGCCGAAGGAGAACTTTCTGCTGTCCTACTTGGATTGATGAGAATGCGAAAGTACTCATTTATTGCAGTTTTAAGAGAGGAAATTATTGAAGGAGTCAAAAGTGTAATGCGACAAGTTATTAAAAATCAAATTCTAAATAATGGAGTTGATTTGAACGATTTTGATCCTAGTTTGACACAGTTGGGAGAGCCAGTACGAAGAATGAAACATGCTGATTTTTTGAAAACTGTGAAAGCTGTTATGGATGAAGAGTTCTACTTTTGTAAACGATTGGAAGCTCTACAAGATATTCTACTGGAAACTGTTGAACGAGCAAATCCTCTACATCGACATGGCTCTGAAGATATTATAGTTGAGAGAATCGAAGAAGCAAAAGATATTCACGAATCTGAGTCTGACGATGAAGTTGGTACAACTTTTTCCAAATCAGCTAGTTCAGGAGGATTCTCCGTCGGTGGTTCGGCTTTATCCTCTAACGCGTCAGCTACCACTCTTCTTTCGATTGAAGTCAGATCAGAAGCCTTTTTACGACACGTGCTCCCATTGATCGCAGAATTCGGTCATCAATGTGCGCAACAACGGATTTCACGATTGCTCATTGCTCGGGCCAAAAATGCATCAGTGACAGAAGCTACTACACCTACCCAACTATCTGAATGCATTAAACTCGTTAAAGAATTTCAATCCAAGTGTGACAAGGAAGGATGGTATTCCACTCAGAATCAAAAAGTt/at | ||||
| Amino_acid_change | MIQAEGELSAVLLGLMRMRKYSFIAVLREEIIEGVKSVMRQVIKNQILNNGVDLNDFDPSLTQLGEPVRRMKHADFLKTVKAVMDEEFYFCKRLEALQDILLETVERANPLHRHGSEDIIVERIEEAKDIHESESDDEVGTTFSKSASSGGFSVGGSALSSNASATTLLSIEVRSEAFLRHVLPLIAEFGHQCAQQRISRLLIARAKNASVTEATTPTQLSECIKLVKEFQSKCDKEGWYSTQNQKV/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
