WormBase Tree Display for Variation: WBVar00092681
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| WBVar00092681 | Name | Public_name | ok1467 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_V:g.11027793_11028385del | ||||
| Sequence_details | SMap | S_parent | Sequence | C13G3 | |
| Flanking_sequences | CAAGGTCAAATCATTATCTGTATATCATCC | AGCAGAATGGAGTTGACGAGAATATGAAGA | |||
| Mapping_target | C13G3 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK1467_external | ||||
| OK1467_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032037 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00007554 | |||
| Transcript | C13G3.3a.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3a.1:c.858_1450del | ||||
| HGVSp | CE05279:p.Gln287AlafsTer5 | ||||
| cDNA_position | 863-1455 | ||||
| CDS_position | 858-1450 | ||||
| Protein_position | 286-484 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3a.3 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3a.3:c.858_1450del | ||||
| HGVSp | CE05279:p.Gln287AlafsTer5 | ||||
| cDNA_position | 1214-1806 | ||||
| CDS_position | 858-1450 | ||||
| Protein_position | 286-484 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3a.2 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3a.2:c.858_1450del | ||||
| HGVSp | CE05279:p.Gln287AlafsTer5 | ||||
| cDNA_position | 1029-1621 | ||||
| CDS_position | 858-1450 | ||||
| Protein_position | 286-484 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3a.4 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3a.4:c.858_1450del | ||||
| HGVSp | CE05279:p.Gln287AlafsTer5 | ||||
| cDNA_position | 947-1539 | ||||
| CDS_position | 858-1450 | ||||
| Protein_position | 286-484 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3c.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3c.1:c.1008_1600del | ||||
| HGVSp | CE41982:p.Gln337AlafsTer5 | ||||
| cDNA_position | 1008-1600 | ||||
| CDS_position | 1008-1600 | ||||
| Protein_position | 336-534 | ||||
| Exon_number | 5/6 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3b.3 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3b.3:c.870_1462del | ||||
| HGVSp | CE20505:p.Gln291AlafsTer5 | ||||
| cDNA_position | 959-1551 | ||||
| CDS_position | 870-1462 | ||||
| Protein_position | 290-488 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3d.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3d.1:c.909_1501del | ||||
| HGVSp | CE47210:p.Gln304AlafsTer5 | ||||
| cDNA_position | 909-1501 | ||||
| CDS_position | 909-1501 | ||||
| Protein_position | 303-501 | ||||
| Exon_number | 5/6 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3b.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3b.1:c.870_1462del | ||||
| HGVSp | CE20505:p.Gln291AlafsTer5 | ||||
| cDNA_position | 875-1467 | ||||
| CDS_position | 870-1462 | ||||
| Protein_position | 290-488 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| C13G3.3b.2 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C13G3.3b.2:c.870_1462del | ||||
| HGVSp | CE20505:p.Gln291AlafsTer5 | ||||
| cDNA_position | 1042-1634 | ||||
| CDS_position | 870-1462 | ||||
| Protein_position | 290-488 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | ccTCAACTCGCGTACTGTGTCGTACAGTTCATTGAAAAAGACTCATCACTGACAGAGCCTGTAATCAGTGGGATGCTACGCTTCTGGCCAAAACAACATAGTCCCAAGGAAGTGATGTTCCTGAATGAATTGGAAGAAGTCCTCGATGTGATAGAGCCGAATGAGTTCCAAAAAATCATGACTCCATTGTTCTCACAAATTGCTCGCTGTGTCAGCAGTCCACACTTCCAAGTTGCCGAACGAGCTCTCTACTATTGGAATAATGAATATGTGATGTCATTAGTAGCGGACAATGCTCGTGTGATAATTCCAATAATGTTCCCTGTTCTTTTCAAAAACAGCAAGTCACATTGGAATAAAACGATTCATGGACTTATCTACAACGCCCTCAAGATGTTCATGGAAATGAATCAAAAACTGTTTGACGAGTGTTCCCAAGCTTATCAGAAAGATCGAGTTCAAGAAAAGACATTGAATGAAGAAAAAGAACGCATCTGGAACAATATTGAGAAACAGGCAATGGGAAACCCGCAATATGTTGAAGTTAAAGCACTATTTGCTCGATTTAATCCAGATGAAATCATCAGCTCGCGTCag/ccag | ||||
| Amino_acid_change | PQLAYCVVQFIEKDSSLTEPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQVAERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKERIWNNIEKQAMGNPQYVEVKALFARFNPDEIISSRQ/PX | ||||
| Remark | Allele sequenced by Logan Morrison | Curator_confirmed | WBPerson2970 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
