WormBase Tree Display for Variation: WBVar00092784

WBVar00092784 Name: Public_name: ok1575
    Other_name: Y67D8C.5g.1:c.4429-60_5949del
      Y67D8C.5d.1:c.4435-60_5955del
      Y67D8C.5h.1:c.4435-60_5955del
      Y67D8C.5c.1:c.4429-60_5949del
      Y67D8C.5a.1:c.4429-60_5949del
      Y67D8C.5f.1:c.4435-60_5955del
      Y67D8C.5b.1:c.4435-60_5955del
      Y67D8C.5e.1:c.4429-60_5949del
    HGVSg: CHROMOSOME_IV:g.3042336_3043972del
  Sequence_details: SMap: S_parent: Sequence: Y67D8C
    Flanking_sequences: gaagttgagagtatcggcgaaatccttcga cacataaaatcatgattttcagtgaaaatt
    Mapping_target: Y67D8C
    Type_of_mutation: Deletion
    PCR_product: OK1575_external
      OK1575_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036324
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00022069
    Transcript: Y67D8C.5g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5g.1:c.4429-60_5949del
        cDNA_position: ?-5949
        CDS_position: ?-5949
        Protein_position: ?-1983
        Intron_number: 6-7/15
        Exon_number: 7-8/16
      Y67D8C.5h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5h.1:c.4435-60_5955del
        cDNA_position: ?-5955
        CDS_position: ?-5955
        Protein_position: ?-1985
        Intron_number: 6-7/14
        Exon_number: 7-8/15
      Y67D8C.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5c.1:c.4429-60_5949del
        cDNA_position: ?-6018
        CDS_position: ?-5949
        Protein_position: ?-1983
        Intron_number: 7-8/16
        Exon_number: 8-9/17
      Y67D8C.5d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5d.1:c.4435-60_5955del
        cDNA_position: ?-5955
        CDS_position: ?-5955
        Protein_position: ?-1985
        Intron_number: 6-7/14
        Exon_number: 7-8/15
      Y67D8C.5f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5f.1:c.4435-60_5955del
        cDNA_position: ?-5955
        CDS_position: ?-5955
        Protein_position: ?-1985
        Intron_number: 6-7/14
        Exon_number: 7-8/15
      Y67D8C.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5a.1:c.4429-60_5949del
        cDNA_position: ?-6082
        CDS_position: ?-5949
        Protein_position: ?-1983
        Intron_number: 7-8/16
        Exon_number: 8-9/17
      Y67D8C.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5b.1:c.4435-60_5955del
        cDNA_position: ?-5955
        CDS_position: ?-5955
        Protein_position: ?-1985
        Intron_number: 6-7/14
        Exon_number: 7-8/15
      Y67D8C.5e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y67D8C.5e.1:c.4429-60_5949del
        cDNA_position: ?-5949
        CDS_position: ?-5949
        Protein_position: ?-1983
        Intron_number: 6-7/15
        Exon_number: 7-8/16
    Interactor: WBInteraction000051806
      WBInteraction000051814
      WBInteraction000051818
      WBInteraction000051821
      WBInteraction000521343
  Isolation: Mutagen: UV/TMP
  Disease_info: Models_disease: DOID:0060309
    Models_disease_in_annotation: WBDOannot00000449
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele