WormBase Tree Display for Variation: WBVar00092789

WBVar00092789 Evidence: Person_evidence: WBPerson1168
  Name: Public_name: ok1580
    Other_name: ZC328.4.1:c.327_1089+13del
    HGVSg: CHROMOSOME_I:g.6407947_6408938del
  Sequence_details: SMap: S_parent: Sequence: ZC328
    Flanking_sequences: aactgaaaaaaacaataaaatatattttag taaaataatttaaaaaaaacattttgaagg
    Mapping_target: ZC328
    Type_of_mutation: Deletion
    PCR_product: ok1580_external
      ok1580_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032089
      WBStrain00034701
    Laboratory: RB
    Person: WBPerson46
      WBPerson1168
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004721
    Transcript: ZC328.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZC328.4.1:c.327_1089+13del
        cDNA_position: 335-?
        CDS_position: 327-?
        Protein_position: 109-?
        Intron_number: 4-8/9
        Exon_number: 4-8/10
  Genetics: Mapping_data: In_multi_point: 5246
  Description: Phenotype: WBPhenotype:0001989 Paper_evidence: WBPaper00034694
        Curator_confirmed: WBPerson2857
        Remark: embryos in uterus of animals exposed to 1000 ppm oxygen die Paper_evidence: WBPaper00034694
            Curator_confirmed: WBPerson2857
    Phenotype_not_observed: WBPhenotype:0000062 Paper_evidence: WBPaper00032281
        Curator_confirmed: WBPerson712
        Remark: Animals produced viable progeny at levels similar to N2 control animals. Paper_evidence: WBPaper00032281
            Curator_confirmed: WBPerson712
        Variation_effect: Null: Paper_evidence: WBPaper00032281
            Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: Hermaphrodites were fed HT115(DE3) bacteria carrying the pUC19 control plasmid. Total numbers of eggs laid and viable progenies of three hermaphrodites were counted, and the percentages of viable progeny were calculated. Paper_evidence: WBPaper00032281
              Curator_confirmed: WBPerson712
  Reference: WBPaper00032281
    WBPaper00034694
  Remark: Allele sequenced by Risa Kitagawa
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele