WormBase Tree Display for Variation: WBVar00092887

WBVar00092887 Name: Public_name: ok1679
    Other_name: C17G1.4a.1:c.2159_2728-149del
      C17G1.4b.1:c.2159_*80-149del
    HGVSg: CHROMOSOME_X:g.9926543_9927515del
  Sequence_details: SMap: S_parent: Sequence: C17G1
    Flanking_sequences: tatagaaagaaatcttggaaaaaactgtat ttgacggttgagacgcattgaaattaggag
    Mapping_target: C17G1
    Type_of_mutation: Deletion
    PCR_product: OK1679_external
      OK1679_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036417
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00007651
    Transcript: C17G1.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C17G1.4a.1:c.2159_2728-149del
        cDNA_position: 2167-?
        CDS_position: 2159-?
        Protein_position: 720-?
        Intron_number: 7-9/10
        Exon_number: 7-9/11
      C17G1.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C17G1.4b.1:c.2159_*80-149del
        cDNA_position: 2169-?
        CDS_position: 2159-?
        Protein_position: 720-?
        Intron_number: 7-10/10
        Exon_number: 7-10/11
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele