WormBase Tree Display for Variation: WBVar00092895
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| WBVar00092895 | Name | Public_name | ok1688 | ||
|---|---|---|---|---|---|
| Other_name | C44H9.4.1:c.2301_3037del | ||||
| CE35434:p.His768SerfsTer8 | |||||
| HGVSg | CHROMOSOME_V:g.12838255_12838991del | ||||
| Sequence_details | SMap | S_parent | Sequence | C44H9 | |
| Flanking_sequences | agttccagaacataccttgattagcctact | aagtaagtaattttaataatacatataata | |||
| Mapping_target | C44H9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK1688_external | ||||
| OK1688_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036433 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00008099 | |||
| Transcript | C44H9.4.1 | VEP_consequence | frameshift_variant,splice_region_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C44H9.4.1:c.2301_3037del | ||||
| HGVSp | CE35434:p.His768SerfsTer8 | ||||
| cDNA_position | 2321-3057 | ||||
| CDS_position | 2301-3037 | ||||
| Protein_position | 767-1013 | ||||
| Exon_number | 4/9 | ||||
| Codon_change | ctTCATAAATTTCCTAATGCAAGTTTTGGCCTTGTTGGAGACATCAATCAGTTACCAGCTTACTGTGATGATGATTTGCAAGGTCTTCTCAAAGATTATGGAATTGGTAAAACAATGGCAAGAGCTTCTCGTGATAAAATGTTTCCACAATCTATCCTTCGACTTGTTTATCGATGTCATCCAACTACCACAAAAATTCTGAGTGATCTATTTTACAATGGTCAGTTGATTTCTGGAGTAGAAAAGAATCAGAGAGACGAATTCATGAGAATGCGCCCTGATATTTGGCCAAATTCATCTTTCCCAATTCTTGTTCTCAATCACGAGAAAGACGGATATCGTATGGGCACTTCGGTGGCAAATAATTCTGAAAAAGATCAAGTTGTGAGAATTGTTAGTTTATTAACTAAGAAAGTCAAAGGATATGGTCTCTCAGAATCTGATATTGGTATTATTTCATTCTATAAAGCCCAAACATCTTTACTCGCGGATGCATTAAAGAAAACTGATGTAAAATGTGGAACAATTGATGCATTTCAAGGAACTGAACGAGAAGTGATGATTGTTTGCTGCACTAATAAGAATCCATCCCTTTTTATGCAAGAAGGAACTCGTGTCAACGTGGCAATGTCTAGAGCTCGTCAAGCGACTATTATCATTGGAAATATTGCAAAACTGAAGAAAGCAAAACATTGGGATACAATTGCTCAGAGTGCACAGATCAACAAATGCTCAATGGaa/ctaa | ||||
| Amino_acid_change | LHKFPNASFGLVGDINQLPAYCDDDLQGLLKDYGIGKTMARASRDKMFPQSILRLVYRCHPTTTKILSDLFYNGQLISGVEKNQRDEFMRMRPDIWPNSSFPILVLNHEKDGYRMGTSVANNSEKDQVVRIVSLLTKKVKGYGLSESDIGIISFYKAQTSLLADALKKTDVKCGTIDAFQGTEREVMIVCCTNKNPSLFMQEGTRVNVAMSRARQATIIIGNIAKLKKAKHWDTIAQSAQINKCSME/LX | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
