WormBase Tree Display for Variation: WBVar00092910
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| WBVar00092910 | Name | Public_name | ok1705 | ||
|---|---|---|---|---|---|
| Other_name | T28D9.7.1:c.2266_2920+315delinsGAAAAGAAGC | ||||
| HGVSg | CHROMOSOME_II:g.6477768_6478827delinsGCTTCTTTTC | ||||
| Sequence_details | SMap | S_parent | Sequence | T28D9 | |
| Flanking_sequences | gtgatgttcactattatcgctgtcttccgt | tccagcttcttttctcatttttccagatgc | |||
| Mapping_target | T28D9 | ||||
| Type_of_mutation | Insertion | GCTTCTTTTC | |||
| Deletion | |||||
| PCR_product | ok1705_external | ||||
| ok1705_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032167 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020897 | |||
| WBGene00020896 | |||||
| Transcript | T28D9.4b.1 | VEP_consequence | coding_sequence_variant,3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 425-? | ||||
| CDS_position | 421-? | ||||
| Protein_position | 141-? | ||||
| Exon_number | 3-4/4 | ||||
| T28D9.7.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T28D9.7.1:c.2266_2920+315delinsGAAAAGAAGC | ||||
| cDNA_position | 2348-? | ||||
| CDS_position | 2266-? | ||||
| Protein_position | 756-? | ||||
| Intron_number | 15-17/19 | ||||
| Exon_number | 15-17/20 | ||||
| T28D9.4a.1 | VEP_consequence | coding_sequence_variant,3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 253-? | ||||
| CDS_position | 253-? | ||||
| Protein_position | 85-? | ||||
| Exon_number | 1/1 | ||||
| Isolation | Mutagen | EMS | |||
| Reference | WBPaper00065804 | ||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
