WormBase Tree Display for Variation: WBVar00092918
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| WBVar00092918 | Name | Public_name | ok1713 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_I:g.14721324_14722133delinsAAT | ||||
| Sequence_details | SMap | S_parent | Sequence | K05C4 | |
| Flanking_sequences | agtccgtcccatcggtacccgccgctcgaa | tttttagatcttggattttactggaaaatg | |||
| Mapping_target | K05C4 | ||||
| Type_of_mutation | Insertion | AAT | |||
| Deletion | |||||
| PCR_product | ok1713_external | ||||
| ok1713_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036455 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010587 | |||
| WBGene00010579 | |||||
| Transcript | K05C4.11.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| Intron_number | 6/7 | ||||
| Exon_number | 7-8/8 | ||||
| K05C4.2.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-87 | ||||
| CDS_position | ?-16 | ||||
| Protein_position | ?-6 | ||||
| Intron_number | 1/4 | ||||
| Exon_number | 1-3/5 | ||||
| K05C4.2.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-32 | ||||
| CDS_position | ?-16 | ||||
| Protein_position | ?-6 | ||||
| Exon_number | 1-2/4 | ||||
| K05C4.11.2 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 7/8 | ||||
| Exon_number | 8-9/9 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
