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WormBase Tree Display for Variation: WBVar00093004

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Name Class

WBVar00093004NamePublic_nameok1806
Other_nameCE42417:p.Met622IlefsTer8
T01C2.1.1:c.1866_2568delinsAGAATTTAATTTCAGTTACTGATGTCAATGATTTATTTTTCCTCGTTTACAGTTCTGATAACTGCGAAATTGATTCGTATAAACCAATATGAAGCGTAAGTCGACTATTTGATTTTTTTAATTTATTGACTTTTCATCTTAAACCTGTTCCAGACTGCTATCCACCTATGCAAACTTCTGTGTTTTATCCTGTTTGACACTGCTATTAGTTGTATTTAGTACCAGAAGAAGTGAACTTATTTCCAGATACGATTTCATTTGGAAACTTCAGGTTGGTTTTTGAAACAAAAATTCAAGTCATCAGTTTCCATTCTCGTTCAGGCTCTAGACGAACAACTTCAAATGAAGCGAAAGCATGAACAGAATCGAAGTGTTCTTGAGAATATTCTTCCATCTCATGTTGCTAAGCATTTTGTTGAAGATGCTACAAGTGTCTCGAAGCTTTACCATGAGTCTCGTGACAATGCTTGTATCATGTTTGCAACATTAACAGAATTTGATAAGTTTTATATTGAATGCGATGGGAATAATGAGGGAGTGGAATGCCTTCGACTGCTCAATGAGATTATATCGGATTTC
HGVSgCHROMOSOME_V:g.5625719_5627036delinsGAAATCCGATATAATCTCATTGAGCAGTCGAAGGCATTCCACTCCCTCATTATTCCCATCGCATTCAATATAAAACTTATCAAATTCTGTTAATGTTGCAAACATGATACAAGCATTGTCACGAGACTCATGGTAAAGCTTCGAGACACTTGTAGCATCTTCAACAAAATGCTTAGCAACATGAGATGGAAGAATATTCTCAAGAACACTTCGATTCTGTTCATGCTTTCGCTTCATTTGAAGTTGTTCGTCTAGAGCCTGAACGAGAATGGAAACTGATGACTTGAATTTTTGTTTCAAAAACCAACCTGAAGTTTCCAAATGAAATCGTATCTGGAAATAAGTTCACTTCTTCTGGTACTAAATACAACTAATAGCAGTGTCAAACAGGATAAAACACAGAAGTTTGCATAGGTGGATAGCAGTCTGGAACAGGTTTAAGATGAAAAGTCAATAAATTAAAAAAATCAAATAGTCGACTTACGCTTCATATTGGTTTATACGAATCAATTTCGCAGTTATCAGAACTGTAAACGAGGAAAAATAAATCATTGACATCAGTAACTGAAATTAAATTCT
Sequence_detailsSMapS_parentSequenceT01C2
Flanking_sequencescttaaattcttcccgatccaaaatctgatcataacactggtgagaacgatgaacatttgt
Mapping_targetT01C2
Type_of_mutationInsertionGAAATCCGATATAATCTCATTGAGCAGTCGAAGGCATTCCACTCCCTCATTATTCCCATCGCATTCAATATAAAACTTATCAAATTCTGTTAATGTTGCAAACATGATACAAGCATTGTCACGAGACTCATGGTAAAGCTTCGAGACACTTGTAGCATCTTCAACAAAATGCTTAGCAACATGAGATGGAAGAATATTCTCAAGAACACTTCGATTCTGTTCATGCTTTCGCTTCATTTGAAGTTGTTCGTCTAGAGCCTGAACGAGAATGGAAACTGATGACTTGAATTTTTGTTTCAAAAACCAACCTGAAGTTTCCAAATGAAATCGTATCTGGAAATAAGTTCACTTCTTCTGGTACTAAATACAACTAATAGCAGTGTCAAACAGGATAAAACACAGAAGTTTGCATAGGTGGATAGCAGTCTGGAACAGGTTTAAGATGAAAAGTCAATAAATTAAAAAAATCAAATAGTCGACTTACGCTTCATATTGGTTTATACGAATCAATTTCGCAGTTATCAGAACTGTAAACGAGGAAAAATAAATCATTGACATCAGTAACTGAAATTAAATTCT
Deletion
PCR_productok1806_external
ok1806_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00005680
WBStrain00005681
WBStrain00005684
WBStrain00005685
WBStrain00005722
WBStrain00005740
WBStrain00005757
WBStrain00036520
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00196110
WBGene00000071
TranscriptT01C2.3VEP_consequencetranscript_ablation
VEP_impactHIGH
Exon_number1/1
T01C2.1.1 (11)
Interactor (84)
IsolationMutagenEMS
DescriptionPhenotypeWBPhenotype:0000059Paper_evidenceWBPaper00041364
Curator_confirmedWBPerson712
RemarkUnlike the wild type, acy-4(ok1806) worms exhibit a growth defect on standard nematode growth medium with the bacterial strain HT115(DE3) as a food source, as opposed to OP50-1. Under these conditions, acy-4(ok1806) animals exhibit larval lethality or arrest, or they grow slowly and appear grossly unhealthy (Figure S10).Paper_evidenceWBPaper00041364
Curator_confirmedWBPerson712
Rescued_by_transgeneWBTransgene00006903
WBPhenotype:0000688Paper_evidenceWBPaper00041364
Curator_confirmedWBPerson712
RemarkBrood size = 1 +/- 2 (n=30)Paper_evidenceWBPaper00041364
Curator_confirmedWBPerson712
WBPhenotype:0002195Paper_evidenceWBPaper00041364
Curator_confirmedWBPerson712
RemarkUnlike the wild type, acy-4(ok1806) worms exhibit a growth defect on standard nematode growth medium with the bacterial strain HT115(DE3) as a food source, as opposed to OP50-1. Under these conditions, acy-4(ok1806) animals exhibit larval lethality or arrest, or they grow slowly and appear grossly unhealthy (Figure S10).Paper_evidenceWBPaper00041364
Curator_confirmedWBPerson712
ReferenceWBPaper00041364
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele