WormBase Tree Display for Variation: WBVar00093004
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WBVar00093004 | Name | Public_name | ok1806 | ||||
---|---|---|---|---|---|---|---|
Other_name | CE42417:p.Met622IlefsTer8 | ||||||
T01C2.1.1:c.1866_2568delinsAGAATTTAATTTCAGTTACTGATGTCAATGATTTATTTTTCCTCGTTTACAGTTCTGATAACTGCGAAATTGATTCGTATAAACCAATATGAAGCGTAAGTCGACTATTTGATTTTTTTAATTTATTGACTTTTCATCTTAAACCTGTTCCAGACTGCTATCCACCTATGCAAACTTCTGTGTTTTATCCTGTTTGACACTGCTATTAGTTGTATTTAGTACCAGAAGAAGTGAACTTATTTCCAGATACGATTTCATTTGGAAACTTCAGGTTGGTTTTTGAAACAAAAATTCAAGTCATCAGTTTCCATTCTCGTTCAGGCTCTAGACGAACAACTTCAAATGAAGCGAAAGCATGAACAGAATCGAAGTGTTCTTGAGAATATTCTTCCATCTCATGTTGCTAAGCATTTTGTTGAAGATGCTACAAGTGTCTCGAAGCTTTACCATGAGTCTCGTGACAATGCTTGTATCATGTTTGCAACATTAACAGAATTTGATAAGTTTTATATTGAATGCGATGGGAATAATGAGGGAGTGGAATGCCTTCGACTGCTCAATGAGATTATATCGGATTTC | |||||||
HGVSg | CHROMOSOME_V:g.5625719_5627036delinsGAAATCCGATATAATCTCATTGAGCAGTCGAAGGCATTCCACTCCCTCATTATTCCCATCGCATTCAATATAAAACTTATCAAATTCTGTTAATGTTGCAAACATGATACAAGCATTGTCACGAGACTCATGGTAAAGCTTCGAGACACTTGTAGCATCTTCAACAAAATGCTTAGCAACATGAGATGGAAGAATATTCTCAAGAACACTTCGATTCTGTTCATGCTTTCGCTTCATTTGAAGTTGTTCGTCTAGAGCCTGAACGAGAATGGAAACTGATGACTTGAATTTTTGTTTCAAAAACCAACCTGAAGTTTCCAAATGAAATCGTATCTGGAAATAAGTTCACTTCTTCTGGTACTAAATACAACTAATAGCAGTGTCAAACAGGATAAAACACAGAAGTTTGCATAGGTGGATAGCAGTCTGGAACAGGTTTAAGATGAAAAGTCAATAAATTAAAAAAATCAAATAGTCGACTTACGCTTCATATTGGTTTATACGAATCAATTTCGCAGTTATCAGAACTGTAAACGAGGAAAAATAAATCATTGACATCAGTAACTGAAATTAAATTCT | ||||||
Sequence_details | SMap | S_parent | Sequence | T01C2 | |||
Flanking_sequences | cttaaattcttcccgatccaaaatctgatc | ataacactggtgagaacgatgaacatttgt | |||||
Mapping_target | T01C2 | ||||||
Type_of_mutation | Insertion | GAAATCCGATATAATCTCATTGAGCAGTCGAAGGCATTCCACTCCCTCATTATTCCCATCGCATTCAATATAAAACTTATCAAATTCTGTTAATGTTGCAAACATGATACAAGCATTGTCACGAGACTCATGGTAAAGCTTCGAGACACTTGTAGCATCTTCAACAAAATGCTTAGCAACATGAGATGGAAGAATATTCTCAAGAACACTTCGATTCTGTTCATGCTTTCGCTTCATTTGAAGTTGTTCGTCTAGAGCCTGAACGAGAATGGAAACTGATGACTTGAATTTTTGTTTCAAAAACCAACCTGAAGTTTCCAAATGAAATCGTATCTGGAAATAAGTTCACTTCTTCTGGTACTAAATACAACTAATAGCAGTGTCAAACAGGATAAAACACAGAAGTTTGCATAGGTGGATAGCAGTCTGGAACAGGTTTAAGATGAAAAGTCAATAAATTAAAAAAATCAAATAGTCGACTTACGCTTCATATTGGTTTATACGAATCAATTTCGCAGTTATCAGAACTGTAAACGAGGAAAAATAAATCATTGACATCAGTAACTGAAATTAAATTCT | |||||
Deletion | |||||||
PCR_product | ok1806_external | ||||||
ok1806_internal | |||||||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00005680 | ||||||
WBStrain00005681 | |||||||
WBStrain00005684 | |||||||
WBStrain00005685 | |||||||
WBStrain00005722 | |||||||
WBStrain00005740 | |||||||
WBStrain00005757 | |||||||
WBStrain00036520 | |||||||
Laboratory | RB | ||||||
Person | WBPerson46 | ||||||
KO_consortium_allele | |||||||
Status | Live | ||||||
Affects | Gene | WBGene00196110 | |||||
WBGene00000071 | |||||||
Transcript | T01C2.3 | VEP_consequence | transcript_ablation | ||||
VEP_impact | HIGH | ||||||
Exon_number | 1/1 | ||||||
T01C2.1.1 (11) | |||||||
Interactor (84) | |||||||
Isolation | Mutagen | EMS | |||||
Description | Phenotype | WBPhenotype:0000059 | Paper_evidence | WBPaper00041364 | |||
Curator_confirmed | WBPerson712 | ||||||
Remark | Unlike the wild type, acy-4(ok1806) worms exhibit a growth defect on standard nematode growth medium with the bacterial strain HT115(DE3) as a food source, as opposed to OP50-1. Under these conditions, acy-4(ok1806) animals exhibit larval lethality or arrest, or they grow slowly and appear grossly unhealthy (Figure S10). | Paper_evidence | WBPaper00041364 | ||||
Curator_confirmed | WBPerson712 | ||||||
Rescued_by_transgene | WBTransgene00006903 | ||||||
WBPhenotype:0000688 | Paper_evidence | WBPaper00041364 | |||||
Curator_confirmed | WBPerson712 | ||||||
Remark | Brood size = 1 +/- 2 (n=30) | Paper_evidence | WBPaper00041364 | ||||
Curator_confirmed | WBPerson712 | ||||||
WBPhenotype:0002195 | Paper_evidence | WBPaper00041364 | |||||
Curator_confirmed | WBPerson712 | ||||||
Remark | Unlike the wild type, acy-4(ok1806) worms exhibit a growth defect on standard nematode growth medium with the bacterial strain HT115(DE3) as a food source, as opposed to OP50-1. Under these conditions, acy-4(ok1806) animals exhibit larval lethality or arrest, or they grow slowly and appear grossly unhealthy (Figure S10). | Paper_evidence | WBPaper00041364 | ||||
Curator_confirmed | WBPerson712 | ||||||
Reference | WBPaper00041364 | ||||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
Method | KO_consortium_allele |