WormBase Tree Display for Variation: WBVar00093019

WBVar00093019 Name: Public_name: ok1821
    HGVSg: CHROMOSOME_I:g.5759781_5761550del
  Sequence_details: SMap: S_parent: Sequence: T22E7
    Flanking_sequences: aataattgaagatgtttgtcaagaagtaga gcctcacactcttcttcagacattccttgc
    Mapping_target: T22E7
    Type_of_mutation: Deletion
    PCR_product: OK1821_external
      OK1821_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032218
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00018995
      WBGene00045483
    Transcript: F56H1.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-722
        CDS_position: ?-701
        Protein_position: ?-234
        Intron_number: 2-6/19
        Exon_number: 1-7/20
      F56H1.7.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 527-?
        CDS_position: 459-?
        Protein_position: 153-?
        Intron_number: 4/5
        Exon_number: 4-6/6
    Interactor: WBInteraction000505076
      WBInteraction000505138
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0002038 Paper_evidence: WBPaper00040278
        Curator_confirmed: WBPerson3755
      WBPhenotype:0002212 Paper_evidence: WBPaper00040278
        Curator_confirmed: WBPerson3755
        Remark: Dyf defect becomes progressively more severe with age. Paper_evidence: WBPaper00040278
            Curator_confirmed: WBPerson3755
        EQ_annotations: Anatomy_term: WBbt:0005391 PATO:0000460 Paper_evidence: WBPaper00040278
                Curator_confirmed: WBPerson3755
  Reference: WBPaper00040278
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele