WormBase Tree Display for Variation: WBVar00093036

WBVar00093036 Name: Public_name: ok1838
    Other_name: F25C8.2a.1:c.4-8_975+490del
    HGVSg: CHROMOSOME_V:g.20900028_20901608del
  Sequence_details: SMap: S_parent: Sequence: F25C8
    Flanking_sequences: ccttattgtaatttttgcaaaatccttaaa tgcaaaagtttgtcagacagtttcttagtg
    Mapping_target: F25C8
    Type_of_mutation: Deletion
    PCR_product: OK1838_external
      OK1838_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032229
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00000139
    Transcript: F25C8.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-3/5
      F25C8.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F25C8.2a.1:c.4-8_975+490del
        Intron_number: 2-5/7
        Exon_number: 3-5/8
  Isolation: Mutagen: EMS
  Reference: WBPaper00065359
  Remark: Breakpoints should be confirmed; manual analysis was required due to poor sequence quality in the breakpoint region.
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele