WormBase Tree Display for Variation: WBVar00093040
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WBVar00093040 | Name | Public_name | ok1843 | ||
---|---|---|---|---|---|
Other_name | T22B2.4b.1:c.82+14_*31-278del | ||||
T22B2.4a.1:c.82+14_441-278del | |||||
T22B2.4b.2:c.82+14_*382del | |||||
HGVSg | CHROMOSOME_X:g.3904734_3906536del | ||||
Sequence_details | SMap | S_parent | Sequence | T22B2 | |
Flanking_sequences | cgccgaaccagtagttggtgagtttcctgt | caatgattttacttttcattctatccaaat | |||
Mapping_target | T22B2 | ||||
Type_of_mutation | Deletion | ||||
PCR_product | ok1843_external | ||||
ok1843_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00036719 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00006321 | |||
Transcript | T22B2.4b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | T22B2.4b.2:c.82+14_*382del | ||||
cDNA_position | ?-888 | ||||
Intron_number | 2-5/7 | ||||
Exon_number | 3-7/8 | ||||
T22B2.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T22B2.4a.1:c.82+14_441-278del | ||||
Intron_number | 2-5/7 | ||||
Exon_number | 3-5/8 | ||||
T22B2.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T22B2.4b.1:c.82+14_*31-278del | ||||
Intron_number | 2-7/8 | ||||
Exon_number | 3-7/9 | ||||
Isolation | Mutagen | UV/TMP | |||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |