WormBase Tree Display for Variation: WBVar00093052

WBVar00093052 Name: Public_name: ok1855
    HGVSg: CHROMOSOME_III:g.4685422_4686837del
  Sequence_details: SMap: S_parent: Sequence: T04A8
    Flanking_sequences: tctgtaccttgtatccatttctggcacgat gcctgaaaattcagttaatttagactttga
    Mapping_target: T04A8
    Type_of_mutation: Deletion
    PCR_product: ok1855_external
      ok1855_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036899
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00011405
      WBGene00044078
    Transcript: T04A8.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 459-?
        CDS_position: 213-?
        Protein_position: 71-?
        Intron_number: 5-6/7
        Exon_number: 5-8/8
      T04A8.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 180-?
        CDS_position: 177-?
        Protein_position: 59-?
        Intron_number: 4-5/6
        Exon_number: 4-7/7
    Pseudogene: T04A8.3 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-112
        Exon_number: 1/5
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele