WormBase Tree Display for Variation: WBVar00093085
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| WBVar00093085 | Name | Public_name | ok1890 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_III:g.1080542_1081439delinsTTTTTTTAACACTTTT | ||||
| Sequence_details | SMap | S_parent | Sequence | Y92C3B | |
| Flanking_sequences | aggataattttttttttgttgggaaattta | tacgggcttcgcagagcgatttatcgattg | |||
| Mapping_target | Y92C3B | ||||
| Type_of_mutation | Insertion | TTTTTTTAACACTTTT | |||
| Deletion | |||||
| PCR_product | ok1890_external | ||||
| ok1890_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036649 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022357 | |||
| WBGene00003917 | |||||
| WBGene00004277 | |||||
| Transcript | Y92C3B.1.1 | VEP_consequence | transcript_ablation | ||
| VEP_impact | HIGH | ||||
| Intron_number | 2/3 | ||||
| Exon_number | 1-4/4 | ||||
| F58B6.3e.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-38 | ||||
| Exon_number | 1/13 | ||||
| F58B6.3b.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-39 | ||||
| CDS_position | ?-31 | ||||
| Protein_position | ?-11 | ||||
| Exon_number | 1-2/12 | ||||
| F58B6.3d.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-38 | ||||
| CDS_position | ?-31 | ||||
| Protein_position | ?-11 | ||||
| Exon_number | 1-2/11 | ||||
| F58B6.3a.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | ?-45 | ||||
| CDS_position | ?-31 | ||||
| Protein_position | ?-11 | ||||
| Exon_number | 1-2/13 | ||||
| Y92C3B.3b.2 | VEP_consequence | splice_donor_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1/5 | ||||
| Exon_number | 1/6 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
