WormBase Tree Display for Variation: WBVar00093122

WBVar00093122 Evidence: Paper_evidence: WBPaper00032243
  Name: Public_name: ok1927
    Other_name: T22G5.5b.1:c.166_1101+14del
      T22G5.5a.1:c.139_1074+14del
    HGVSg: CHROMOSOME_V:g.13893597_13895181del
  Sequence_details: SMap: S_parent: Sequence: T22G5
    Flanking_sequences: gtattttggcttgtccaattgaatattaca gttttgaaaaattacgagcttgttccaata
    Mapping_target: T22G5
    Type_of_mutation: Deletion
    PCR_product: OK1927_external
      OK1927_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032275
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00011932
    Transcript: T22G5.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T22G5.5a.1:c.139_1074+14del
        cDNA_position: 149-?
        CDS_position: 139-?
        Protein_position: 47-?
        Intron_number: 3-7/11
        Exon_number: 3-7/12
      T22G5.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T22G5.5b.1:c.166_1101+14del
        cDNA_position: 166-?
        CDS_position: 166-?
        Protein_position: 56-?
        Intron_number: 3-7/10
        Exon_number: 3-7/11
  Isolation: Mutagen: UV/TMP
  Description: Phenotype_not_observed: WBPhenotype:0002541 Paper_evidence: WBPaper00032243
        Curator_confirmed: WBPerson712
        Remark: Radiation-induced germ cell apoptosis was not inhibited. Paper_evidence: WBPaper00032243
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0005784 PATO:0000460 Paper_evidence: WBPaper00032243
                Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: At least 20 animals were scored for germ cell apoptosis at 36 hours post-120 Gy and compared to WT-irradiated controls. Paper_evidence: WBPaper00032243
              Curator_confirmed: WBPerson712
  Reference: WBPaper00032243
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele