WormBase Tree Display for Variation: WBVar00093136

WBVar00093136 Name: Public_name: ok1941
    Other_name: T14F9.4c.1:c.444+216_615del
      T14F9.4a.1:c.396+216_567del
    HGVSg: CHROMOSOME_X:g.2216497_2217275del
  Sequence_details: SMap: S_parent: Sequence: T14F9
    Flanking_sequences: ctagcttttgagagtgtctaagggaattgt aaacgaatgatgaagtttgaagttgatgta
    Mapping_target: T14F9
    Type_of_mutation: Deletion
    PCR_product: OK1941_external
      OK1941_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036952
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00003968
      WBGene00198292
    Transcript: T14F9.4a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T14F9.4a.1:c.396+216_567del
        cDNA_position: ?-570
        CDS_position: ?-567
        Protein_position: ?-189
        Intron_number: 4/7
        Exon_number: 5/8
      T14F9.14 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T14F9.4c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T14F9.4c.1:c.444+216_615del
        cDNA_position: ?-615
        CDS_position: ?-615
        Protein_position: ?-205
        Intron_number: 4/6
        Exon_number: 5/7
      T14F9.4b.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-102
        CDS_position: ?-102
        Protein_position: ?-34
        Exon_number: 1/3
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele